PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P27790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 242aa    MW: 26231.2 Da    PI: 5.6039
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P27790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.33.2e-2844102259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++pr+YYrC+s  gCp++k+vers+ dp ++++ Y+ eHnh+
  GSMUA_Achr8P27790_001  44 SDSWAWRKYGQKPIKGSPHPRGYYRCSSWkGCPARKQVERSRLDPATLVVSYSFEHNHP 102
                            69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-2941104IPR003657WRKY domain
SuperFamilySSF1182905.1E-2541104IPR003657WRKY domain
SMARTSM007741.9E-3343103IPR003657WRKY domain
PROSITE profilePS5081130.51544104IPR003657WRKY domain
PfamPF031061.0E-2445102IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDAWEAEERS KHGGGDRDLK PTHPLAAPPC TKRRNGGGEA FPPSDSWAWR KYGQKPIKGS  60
PHPRGYYRCS SWKGCPARKQ VERSRLDPAT LVVSYSFEHN HPWPLPKNGR HHQNRPTPPA  120
QLPVEEPAPS PPPSTQPCPP EPEEKCPVVI GEDEPLLLID DGGFRWFSDV ASPCSTSAGS  180
DELLYGSVHF GGADAAVVPM LEEREAATAA GEEDSLFAGL EELPESSVVL RRGLASAMGT  240
NG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-17401041379Disease resistance protein RRS1
5w3x_D4e-17401041379Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415176.11e-156PREDICTED: probable WRKY transcription factor 65
TrEMBLM0TU821e-175M0TU82_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P27790_0011e-176(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-39WRKY DNA-binding protein 65