PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P27750_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HSF | ||||||||
Protein Properties | Length: 221aa MW: 25666.3 Da PI: 10.2193 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.1 | 2.2e-36 | 13 | 105 | 1 | 102 |
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 aFl+k+ye+++d+++++++sws ++ sfvv+++ efa+++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ Fk+ GSMUA_Achr8P27750_001 13 AFLTKTYEMVDDPTTNSIVSWSLTNASFVVWNQLEFARDLLPRYFKHNNFSSFVRQLNTYGFRKIEPDQ---------WEFANEGFKR 91 69********************888*****************************************999.........********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkks 102 g+++ll++i+r+k GSMUA_Achr8P27750_001 92 GQRHLLNNIHRRKP 105 ***********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 8.71E-35 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-61 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 8.3E-39 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.2E-20 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 9.7E-32 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-20 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-20 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MESPLASTNS PPAFLTKTYE MVDDPTTNSI VSWSLTNASF VVWNQLEFAR DLLPRYFKHN 60 NFSSFVRQLN TYGFRKIEPD QWEFANEGFK RGQRHLLNNI HRRKPVHSHS LHGQLNSSAP 120 LSDAEKQELE EEIERLKQEK VVLVNELQKQ HTQVQHQMRS LEGRLQALGN RLRAQGRGGC 180 LILIASMRML TSMTIKLQFS SQTFLPCKHL TRSLLRCWNH P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-28 | 5 | 103 | 11 | 120 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009415179.1 | 1e-123 | PREDICTED: heat stress transcription factor A-4b-like | ||||
Swissprot | Q93VB5 | 1e-62 | HFA4D_ORYSJ; Heat stress transcription factor A-4d | ||||
Swissprot | Q94J16 | 6e-63 | HFA4B_ORYSJ; Heat stress transcription factor A-4b | ||||
TrEMBL | M0TU78 | 1e-164 | M0TU78_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P27750_001 | 1e-165 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 8e-54 | heat shock transcription factor A1D |
Publications ? help Back to Top | |||
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