PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P25650_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 300aa MW: 33286.6 Da PI: 8.2205

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P25650_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.8	4.9e-07	136	155	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+ksF+r nL+ H+ GSMUA_Achr8P25650_001 136 FSCPVCSKSFNRYNNLQMHM 155 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.29E-6	132	158	No hit	No description
Pfam	PF12874	0.0015	136	155	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.3E-6	136	155	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.845	136	163	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.035	136	158	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.69E-5	201	240	No hit	No description
SMART	SM00355	120	220	240	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MADHYTNFFE AFLSNNTFSS STPSSPAVAT TYGFSHGHTS SPPVREALPL LRLSPTRHPG 60 EDNTSCSVFD EGGKDEAMCI DGEADAAVIA LHLGPPSPGD GDVVPLGYPS NPIGRINKGQ 120 YWIPTPYQIL IGPIQFSCPV CSKSFNRYNN LQMHMWGHGS QYRKGPESLR GIQPTAMLRL 180 PCYCCAPGCQ NNIDHPRSKP LKDFRTLQTH FKRKHGIKPF VCRKCGKALA VRGDWRTHEK 240 NCGKLWYCIC GSDFKHKRSL KDHIKSFGRG HAPVGADCFE DDDEPLSEIE QDSLQAHKGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009415410.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-116	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	M0TTL8	0.0	M0TTL8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P25650_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-118	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]