PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P25260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 463aa    MW: 51678 Da    PI: 7.6076
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P25260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.44.3e-125075126
                           --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                           ++++ C+f++rtG C+yG++Ck++H+
  GSMUA_Achr8P25260_001 50 PGQPDCSFYLRTGSCSYGSKCKYHHP 75
                           5789*********************9 PP
2zf-CCCH40.25.6e-1393118227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            +++ C+ff++tGtCk+G++Ck++H++
  GSMUA_Achr8P25260_001  93 GQPDCQFFMKTGTCKFGSTCKYHHPQ 118
                            6899********************97 PP
3zf-CCCH39.87.3e-13140163427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                            + C++++rtGtCk+G  CkF+H++
  GSMUA_Achr8P25260_001 140 KSCPYYMRTGTCKFGVACKFNHPQ 163
                            56********************97 PP
4zf-CCCH26.11.4e-08278303227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++C+++ rtG C+yG++Ck++H++
  GSMUA_Achr8P25260_001 278 DQPECQHYIRTGCCRYGSSCKYHHPK 303
                            689*********************96 PP
5zf-CCCH33.95.3e-11322347126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            ++++ C f+a +G CkyG+ CkF H+
  GSMUA_Achr8P25260_001 322 PGEPACTFYATYGSCKYGAACKFDHP 347
                            57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.5444977IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-64976IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-95175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-55475IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-45574IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.86391119IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-791118IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-1093118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-497118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615136164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6137164IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5138163IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5141162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.647276304IPR000571Zinc finger, CCCH-type
SMARTSM003560.0035276303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5278304IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5278303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399321349IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6321348IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8323347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-5325348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MPNTRHNAVS DSSSDAPTDH IEESVRHLKI EDGDRRKGAD GQPNPYPDRP GQPDCSFYLR  60
TGSCSYGSKC KYHHPTIAGQ GNHYRGELPQ RDGQPDCQFF MKTGTCKFGS TCKYHHPQDK  120
RDTQVLQLNV LSLPLRKDEK SCPYYMRTGT CKFGVACKFN HPQPANVGAM FPESGLPING  180
YYGSFAPSTG PSLTGELPPW PFSRTTMSSP HMQGLQGFMP LIQPHSQATM PMQQDWSTYM  240
GSIHIPSYSG PRPNHLSNLK NHGQPGSMAP VNFPHRPDQP ECQHYIRTGC CRYGSSCKYH  300
HPKERNPPAA CTIGPFGLPL RPGEPACTFY ATYGSCKYGA ACKFDHPYVA VFPLMEQPLA  360
YPYQRGSECT QMTSDNPSCW MPKAPDELMK PERIGELQDL DDIEHDNPST PTSPSHTAPH  420
SESSSINQSD HFKKTVRFAL DNNYVCEWIV LCFGLGRKQE GCF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415456.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
TrEMBLM0TTH90.0M0TTH9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P25260_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-86C3H family protein