PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P25220_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 296aa    MW: 32818.8 Da    PI: 9.9747
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P25220_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.3e-191256247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           g+W++eEde l  +v+++G+++W++I++ ++ gR++k+c++rw + 
  GSMUA_Achr8P25220_001 12 GPWSQEEDEALQSLVQRHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 56
                           89*****************************.***********985 PP
2Myb_DNA-binding55.61.2e-1766107447
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +T+eEde++v+a++++G++ W+tIar +  gRt++ +k++w++ 
  GSMUA_Achr8P25220_001  66 FTAEEDEIIVRAHRRFGNK-WATIARLLS-GRTDNAIKNHWNST 107
                            9******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.205661IPR017930Myb domain
SuperFamilySSF466891.01E-308104IPR009057Homeodomain-like
SMARTSM007178.7E-161059IPR001005SANT/Myb domain
PfamPF002491.9E-181156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-261264IPR009057Homeodomain-like
CDDcd001675.73E-161355No hitNo description
SMARTSM007172.1E-1462110IPR001005SANT/Myb domain
PROSITE profilePS5129420.51963112IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2265111IPR009057Homeodomain-like
PfamPF002493.7E-1465107IPR001005SANT/Myb domain
CDDcd001673.39E-1266108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGSRKDVDRI TGPWSQEEDE ALQSLVQRHG PRNWSLISKS IPGRSGKSCR LRWCNQLSPQ  60
VEHRHFTAEE DEIIVRAHRR FGNKWATIAR LLSGRTDNAI KNHWNSTLKR KYSTACPVDN  120
ELRHRPLKRA SSDGLTLFHH SHSLISPPAA ASHIHQPFPR TGGVVTLSFS PSQHHHHGGP  180
ITAAADPTSL KNDDGPTTFL TLSLPGSDQI HTSSHRHRCS ATAASPSGRA RIPNADDERR  240
SAPFSFSGEF MAVMQEMIRS EVRSYMVELE QGRMVCGTQP PPCNAAAKRV GVTDAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-41101113104MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-401011157158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-401011157158MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-41101113104C-Myb DNA-Binding Domain
1msf_C9e-41101113104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594182e-81KF059418.1 Salvia miltiorrhiza MYB-related transcription factor (MYB64) mRNA, complete cds.
GenBankKF0595282e-81KF059528.1 Salvia miltiorrhiza MYB-related transcription factor (MYB64) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415461.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231601e-76MYB73_ARATH; Transcription factor MYB73
TrEMBLM0TTH50.0M0TTH5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P25220_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-79myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]