PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P24780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 307aa    MW: 34132.2 Da    PI: 6.001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P24780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
  GSMUA_Achr8P24780_001 14 KGPWSPEEDAKLKAYIEENGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62
                           79*********************************************97 PP
2Myb_DNA-binding43.11e-1368111146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg +T+eEd+++  +    G++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr8P24780_001  68 RGGFTEEEDQRICSLYISIGSR-WSIIAAQLP-GRTDNDVKNYWNT 111
                            788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.687962IPR017930Myb domain
SuperFamilySSF466898.79E-2613109IPR009057Homeodomain-like
SMARTSM007172.8E-121364IPR001005SANT/Myb domain
PfamPF002491.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-241569IPR009057Homeodomain-like
CDDcd001678.27E-91662No hitNo description
PROSITE profilePS5129422.09163117IPR017930Myb domain
SMARTSM007173.2E-1167115IPR001005SANT/Myb domain
PfamPF002495.2E-1268111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2370117IPR009057Homeodomain-like
CDDcd001674.24E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRAPCCDKA IVKKGPWSPE EDAKLKAYIE ENGTGGNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPDIKRGG FTEEEDQRIC SLYISIGSRW SIIAAQLPGR TDNDVKNYWN TKLQKKLFGK  120
RKEPPLHLNH VPTLPASALE RMHLQGLLSS PFSFCSNPEP WPNHQPPGDR SILPSISTDS  180
THQAGFQMRS GILKSESAST RGEVERSALA FHSASTGGSL SVETSTSSFD AVTADLQADE  240
LDDLLYCNHS SSFAGHQEHE LAGLDCCREV FREKESTDWW IVDGFEDEST MVSWDSASAL  300
GSQEYDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415509.10.0PREDICTED: transcription factor MYB36-like
RefseqXP_018686127.10.0PREDICTED: transcription factor MYB36-like
SwissprotQ9FKL21e-76MYB36_ARATH; Transcription factor MYB36
TrEMBLM0TTD10.0M0TTD1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P24780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-79myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]