PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P24280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 587aa    MW: 65113.6 Da    PI: 4.4478
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P24280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.98.4e-53391652128
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                            ppGfrFhPtdee+v +yLk+k+ g++++l  +i +vd+yk+ePw+Lp k ++k+++k+wyfFs+rd+ky++g+r+nratk gyWk+tg
  GSMUA_Achr8P24280_001  39 PPGFRFHPTDEEIVLYYLKRKICGRRFRL-AMIGDVDVYKWEPWELPdKsELKSGDKQWYFFSPRDRKYPNGSRSNRATKCGYWKTTG 125
                            8***************************9.88**************963588999********************************* PP

                    NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            kd+++ + +++++g kktLv+y+grapkge+t+Wvmhey+l
  GSMUA_Achr8P24280_001 126 KDRTISQ-NSKAMGNKKTLVYYHGRAPKGERTNWVMHEYTL 165
                            *****99.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5730186IPR003441NAC domain
PROSITE profilePS5100555.3938186IPR003441NAC domain
PfamPF023651.0E-2739165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MGVAKDCVGR SGGVEAAVDD RCSPGSAAGA WPGNSNWWPP GFRFHPTDEE IVLYYLKRKI  60
CGRRFRLAMI GDVDVYKWEP WELPDKSELK SGDKQWYFFS PRDRKYPNGS RSNRATKCGY  120
WKTTGKDRTI SQNSKAMGNK KTLVYYHGRA PKGERTNWVM HEYTLDEQVF LSCNNDCYAL  180
YKVFRKSGPG PKNGEQYGAP FREEEWDDDV VDEIFRSQDN SELPTNPWNT EVPTIEPLHD  240
LVSAGTSCDA GSNQLVDELE DILLELSNEQ NMVGQYSEHS AYVSEVNVET EIGKHNFCPS  300
LTKATSFENS GICYELSTSD TKFQVTQPDS ACVQPVEDPE MTSLTSNTQQ ILGQADEEFL  360
EIKDFNDPES IMWSWNDLNN RDQIDGPNEL YDSYDYFDAP VAFSDDFDSL GLAAPISYLD  420
GFGGDEALDE SYHVSTELWG HNQGFGASNA DPNQVFMTSP ASGAAYASTS SNMEMVQRQN  480
STSESWFSSA LSTLLDSVPS RPALASENTF ISRAFERVSS FRAGQVGVHG PNATADGHHA  540
TSGRRGGRNG GILFISFLVG LGAVFWVLTA GAVVKVFSAF LARFNSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-493918618165NO APICAL MERISTEM PROTEIN
1ut4_B6e-493918618165NO APICAL MERISTEM PROTEIN
1ut7_A6e-493918618165NO APICAL MERISTEM PROTEIN
1ut7_B6e-493918618165NO APICAL MERISTEM PROTEIN
3swm_A6e-493919221174NAC domain-containing protein 19
3swm_B6e-493919221174NAC domain-containing protein 19
3swm_C6e-493919221174NAC domain-containing protein 19
3swm_D6e-493919221174NAC domain-containing protein 19
3swp_A6e-493919221174NAC domain-containing protein 19
3swp_B6e-493919221174NAC domain-containing protein 19
3swp_C6e-493919221174NAC domain-containing protein 19
3swp_D6e-493919221174NAC domain-containing protein 19
4dul_A6e-493918618165NAC domain-containing protein 19
4dul_B6e-493918618165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415577.10.0PREDICTED: NAC domain-containing protein 17-like
TrEMBLM0TT810.0M0TT81_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P24280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1851269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.12e-78NAC domain containing protein 17