PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P22130_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | SRS | ||||||||
Protein Properties | Length: 307aa MW: 32901.2 Da PI: 9.4151 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 189.2 | 1.5e-58 | 118 | 268 | 5 | 152 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 +a+CqdCGnqakkdC+h+RCRtCCksrgf+C+th+kstWvpaa+rrer +++ a+ +++++sk++r ++ +++s+t +s GSMUA_Achr8P22130_001 118 SATCQDCGNQAKKDCSHRRCRTCCKSRGFECSTHIKSTWVPAARRRERLRTALAS------GSSASTSKKPRLV-ASLPATASHTFTS 198 679*********************************************6655443......3345666777765.5566666677777 PP DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 + +++ + +++s lP +v+++avfrcvrv+s+ d+++++aY+++v+igG vfkG+Ly qG+ GSMUA_Achr8P22130_001 199 NDNPPGSCDATSghedasiresLPGQVRAQAVFRCVRVTSIHDSKDQYAYHAVVKIGGRVFKGLLYGQGM 268 7777777777777778888888***********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.9E-55 | 118 | 268 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 8.3E-27 | 120 | 162 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.7E-23 | 221 | 268 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MVLLASAASF NQQHHHASLL SSSAADQHPI IPLLAAAPCL VDDENVARSK HGGIQLWQSA 60 LPHPPHHHNY LPHTHGANPN PNLNPNPTLS DYLGKSMLTM LDAGGILTGG GAAVGGSSAT 120 CQDCGNQAKK DCSHRRCRTC CKSRGFECST HIKSTWVPAA RRRERLRTAL ASGSSASTSK 180 KPRLVASLPA TASHTFTSND NPPGSCDATS GHEDASIRES LPGQVRAQAV FRCVRVTSIH 240 DSKDQYAYHA VVKIGGRVFK GLLYGQGMMS AASSSLFSKS SVLQLFTALL WTRWESCRPP 300 NSTVWFM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 6e-38 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009414171.1 | 1e-174 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like | ||||
TrEMBL | M0TSL6 | 0.0 | M0TSL6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P22130_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3579 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 8e-48 | Lateral root primordium (LRP) protein-related |