PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P22130_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SRS
Protein Properties Length: 307aa    MW: 32901.2 Da    PI: 9.4151
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P22130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702189.21.5e-581182685152
                 DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 
                            +a+CqdCGnqakkdC+h+RCRtCCksrgf+C+th+kstWvpaa+rrer +++ a+       +++++sk++r   ++  +++s+t +s
  GSMUA_Achr8P22130_001 118 SATCQDCGNQAKKDCSHRRCRTCCKSRGFECSTHIKSTWVPAARRRERLRTALAS------GSSASTSKKPRLV-ASLPATASHTFTS 198
                            679*********************************************6655443......3345666777765.5566666677777 PP

                 DUF702  93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152
                            + +++ + +++s          lP +v+++avfrcvrv+s+ d+++++aY+++v+igG vfkG+Ly qG+
  GSMUA_Achr8P22130_001 199 NDNPPGSCDATSghedasiresLPGQVRAQAVFRCVRVTSIHDSKDQYAYHAVVKIGGRVFKGLLYGQGM 268
                            7777777777777778888888***********************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.9E-55118268IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.3E-27120162IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.7E-23221268IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVLLASAASF NQQHHHASLL SSSAADQHPI IPLLAAAPCL VDDENVARSK HGGIQLWQSA  60
LPHPPHHHNY LPHTHGANPN PNLNPNPTLS DYLGKSMLTM LDAGGILTGG GAAVGGSSAT  120
CQDCGNQAKK DCSHRRCRTC CKSRGFECST HIKSTWVPAA RRRERLRTAL ASGSSASTSK  180
KPRLVASLPA TASHTFTSND NPPGSCDATS GHEDASIRES LPGQVRAQAV FRCVRVTSIH  240
DSKDQYAYHA VVKIGGRVFK GLLYGQGMMS AASSSLFSKS SVLQLFTALL WTRWESCRPP  300
NSTVWFM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703066e-38HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414171.11e-174PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLM0TSL60.0M0TSL6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P22130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.28e-48Lateral root primordium (LRP) protein-related