PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P22120_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 28001.3 Da PI: 8.0213 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.3 | 1e-11 | 54 | 109 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksLq 55 + hn+ Er RR+++N+ ++ Lr+llP+ + + ++kKls i+ ++ +Y+ +Lq GSMUA_Achr8P22120_001 54 KLCHNAYERDRRKKLNDLYSSLRDLLPEsDQaRKKKKKLSIPLIVCRVLKYVPELQ 109 678*************************8765666666999999999999988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-13 | 49 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.52E-7 | 50 | 113 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.6E-11 | 51 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.008 | 52 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-9 | 54 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-6 | 58 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGWQPEDITA HVLHYEDPFA CYPYMEELEI GHDDLLRHCS VLAAKDDSSS STKKLCHNAY 60 ERDRRKKLND LYSSLRDLLP ESDQARKKKK KLSIPLIVCR VLKYVPELQR QVERLSRRKE 120 EILLALSRPE EQSHCVRSAV QYPMVSATCL SKREVMVQLC VVNKDATFSF SKILKVLERE 180 GLHLMNSSNY TTCDGRCVCS LHLQAREDFR SECRIFCEHL MEEIKEQARH GSNLPRSLWM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009414172.2 | 1e-177 | PREDICTED: transcription factor bHLH101 | ||||
TrEMBL | M0TSL5 | 1e-176 | M0TSL5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P22120_001 | 1e-177 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3280 | 34 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 4e-34 | bHLH family protein |