PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P21670_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 582aa MW: 63863.8 Da PI: 9.8708

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P21670_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.4	2.4e-11	183	212	5	34
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR+RKka++++Le GSMUA_Achr8P21670_001 183 KTLRRLAQNREAARKSRLRKKAYVQQLEGS 212 788************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-8	173	225	No hit	No description
SMART	SM00338	1.8E-8	179	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.99	181	224	IPR004827	Basic-leucine zipper domain
CDD	cd14708	3.95E-20	183	235	No hit	No description
Pfam	PF00170	2.3E-8	183	216	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.78E-7	183	226	No hit	No description
PROSITE pattern	PS00036	0	186	201	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.4E-33	265	340	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MGSRKGGVGV EDGKRAASGM PSFVSSPVAQ NIVAEGNTKH PSRVSDFGML EQSVGRNLEA 60 AADFIRNPEV NPKPSVQTSI SGPSHFDNFS KPLGISNIST STARVGSSTV PLHKGQRPHL 120 VSLASGQFEN WGETTMADAS PRTDASTDVD AGDKNHKPKR GQVAAIAASD SSDKTKEKTG 180 DQKTLRRLAQ NREAARKSRL RKKAYVQQLE GSRLKLTHIE QELQHARQQG IFISSSGDQS 240 HAMSGNEGLA FNSEYARWRE EHNRQISELR TAVNAHASEN DLRAIVDGIM AHYDEIFKLK 300 GTAAKADVFH MLSGMWKTPA ERCFLWLGGF RSSELLKLLT SQLEPLTEQQ LMGLCNLQQS 360 SQQAEDALSQ GMEALQQSLA ETLAGSLGSS GSSGNVANYM GQMAMAMGKL GTLENFLCQA 420 DNLRQQTLQQ MCRILTTRQA ARALLAINDY FSRLHALSSL WLARPREFLR SWRAERRPGS 480 GRSTSSKWPA DPNSEDVVAV SQLRSTVSAE IRKNAHIANP KVIDLLLFKG TEELSNIVTH 540 SKQRHHLIGQ YVVGRGGLVQ DMGTKEQGIS EFLKQFYTSN YF

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MGSRKGGVGV EDGKRAASGM PSFVSSPVAQ NIVAEGNTKH PSRVSDFGML EQSVGRNLEA  60
AADFIRNPEV NPKPSVQTSI SGPSHFDNFS KPLGISNIST STARVGSSTV PLHKGQRPHL  120
VSLASGQFEN WGETTMADAS PRTDASTDVD AGDKNHKPKR GQVAAIAASD SSDKTKEKTG  180
DQKTLRRLAQ NREAARKSRL RKKAYVQQLE GSRLKLTHIE QELQHARQQG IFISSSGDQS  240
HAMSGNEGLA FNSEYARWRE EHNRQISELR TAVNAHASEN DLRAIVDGIM AHYDEIFKLK  300
GTAAKADVFH MLSGMWKTPA ERCFLWLGGF RSSELLKLLT SQLEPLTEQQ LMGLCNLQQS  360
SQQAEDALSQ GMEALQQSLA ETLAGSLGSS GSSGNVANYM GQMAMAMGKL GTLENFLCQA  420
DNLRQQTLQQ MCRILTTRQA ARALLAINDY FSRLHALSSL WLARPREFLR SWRAERRPGS  480
GRSTSSKWPA DPNSEDVVAV SQLRSTVSAE IRKNAHIANP KVIDLLLFKG TEELSNIVTH  540
SKQRHHLIGQ YVVGRGGLVQ DMGTKEQGIS EFLKQFYTSN YF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF582553	0.0	KF582553.1 UNVERIFIED: Musa acuminata AAA Group bzip transcription factor-like mRNA, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018685972.1	0.0	PREDICTED: transcription factor TGA2.3-like isoform X1
Swissprot	Q6IVC2	0.0	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	M0TSH0	0.0	M0TSH0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P21670_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-157	TGACG motif-binding factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]