PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P21470_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 516aa MW: 57515.2 Da PI: 8.6797

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P21470_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.5	3.6e-55	16	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdee++++yL++kv++ +++ +++ +vd++k+ePwdLp k+k +ek++yfF+++d+ky+tg r+nrat++gyWkatgk GSMUA_Achr8P21470_001 16 LPPGFRFHPTDEEIITHYLTPKVTDLGFTA-KAMGDVDLNKCEPWDLPGKAKMGEKDLYFFCHKDRKYPTGMRTNRATEAGYWKATGK 102 79***********************999.88***********999999****************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ kg lvg+kktLvfy+grapkg+kt+Wvmhe+rle GSMUA_Achr8P21470_001 103 DKEIYRDKGVLVGMKKTLVFYQGRAPKGQKTNWVMHEFRLE 143 ************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-63	13	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.108	16	167	IPR003441	NAC domain
Pfam	PF02365	4.5E-28	17	142	IPR003441	NAC domain
Gene3D	G3DSA:3.30.420.10	5.9E-28	267	439	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF53098	2.19E-27	270	439	IPR012337	Ribonuclease H-like domain
SMART	SM00479	6.7E-25	272	444	IPR013520	Exonuclease, RNase T/DNA polymerase III
CDD	cd06127	1.96E-27	274	436	No hit	No description
Pfam	PF00929	8.2E-22	274	435	IPR013520	Exonuclease, RNase T/DNA polymerase III

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MVDVSVLNDV DDCIDLPPGF RFHPTDEEII THYLTPKVTD LGFTAKAMGD VDLNKCEPWD 60 LPGKAKMGEK DLYFFCHKDR KYPTGMRTNR ATEAGYWKAT GKDKEIYRDK GVLVGMKKTL 120 VFYQGRAPKG QKTNWVMHEF RLEGKHSLPN LPNSAKDEWV VCRVFHKNIG LKKSPLGDDL 180 MDLATLPPPF MDPPRMESNF TGLPPGVEDP SAYCTLLGST DVGYLHQDEA MMRAFAAANN 240 DVSAATRKPC KVEQFTDISS SAIRRQQIKM GEIVFFDVET TAPAGEGRRL QLLEFGAMLV 300 CPRKLTEVES YCTLIRPADL SAVATKRCSG ITREAVAAAP TFEEVADRIF GILNGTVWAG 360 HNIQRFDCHR IKEAFADIGR PPPEPKGLID SLAILTHGFG RRAGDLKMAT LASYFGLGQQ 420 KHRSLDDVRM NLEVFKNCAT VLLLESSLPQ VFPNKSLGNL GMVTRSRANG RSCGVEACRK 480 SPQPASPVIH RASPYKKDNI RKVNQFVMRP YLHFTI

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MVDVSVLNDV DDCIDLPPGF RFHPTDEEII THYLTPKVTD LGFTAKAMGD VDLNKCEPWD  60
LPGKAKMGEK DLYFFCHKDR KYPTGMRTNR ATEAGYWKAT GKDKEIYRDK GVLVGMKKTL  120
VFYQGRAPKG QKTNWVMHEF RLEGKHSLPN LPNSAKDEWV VCRVFHKNIG LKKSPLGDDL  180
MDLATLPPPF MDPPRMESNF TGLPPGVEDP SAYCTLLGST DVGYLHQDEA MMRAFAAANN  240
DVSAATRKPC KVEQFTDISS SAIRRQQIKM GEIVFFDVET TAPAGEGRRL QLLEFGAMLV  300
CPRKLTEVES YCTLIRPADL SAVATKRCSG ITREAVAAAP TFEEVADRIF GILNGTVWAG  360
HNIQRFDCHR IKEAFADIGR PPPEPKGLID SLAILTHGFG RRAGDLKMAT LASYFGLGQQ  420
KHRSLDDVRM NLEVFKNCAT VLLLESSLPQ VFPNKSLGNL GMVTRSRANG RSCGVEACRK  480
SPQPASPVIH RASPYKKDNI RKVNQFVMRP YLHFTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-49	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-49	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-49	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-49	14	173	15	171	NO APICAL MERISTEM PROTEIN
4dul_A	9e-49	14	173	15	171	NAC domain-containing protein 19
4dul_B	9e-49	14	173	15	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009414240.1	0.0	PREDICTED: NAC domain-containing protein 79-like
Refseq	XP_018686044.1	0.0	PREDICTED: NAC domain-containing protein 79-like
Refseq	XP_018686045.1	0.0	PREDICTED: NAC domain-containing protein 79-like
Swissprot	Q9FK44	8e-92	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	M0TSF0	0.0	M0TSF0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P21470_001	0.0	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-93	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]