PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P21100_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 204aa MW: 24011.3 Da PI: 5.4831 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 76 | 6e-24 | 26 | 107 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+++L+++r ++++++ ++k++kplWe+ s+ ++++gf r+p qCk+kw+nl +r+k i+ e++ +++p++++++ GSMUA_Achr8P21100_001 26 QWTHDETRELLAIRAQLDRSFTETKRNKPLWEATSSMLQQKGFFRTPDQCKSKWKNLVTRFKGIESAEGEI----GKQFPFYEEMR 107 7********************************************************************96....5679*****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0019 | 23 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.82E-23 | 25 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-4 | 26 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.0E-20 | 26 | 109 | No hit | No description |
PROSITE profile | PS50090 | 7.677 | 27 | 83 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MDLHRQRLNP YAQVNPPPES VERFPQWTHD ETRELLAIRA QLDRSFTETK RNKPLWEATS 60 SMLQQKGFFR TPDQCKSKWK NLVTRFKGIE SAEGEIGKQF PFYEEMRRIF ADRMERLLVF 120 EKDKGKGVQV RVKEWEEEAE EEEEEEEEEG KAEESLSSFC RCFAYHQGLV SVAPAKVTEA 180 CKCFFWLLPL CHLLFRLSLA SSPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 2e-15 | 22 | 105 | 2 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018686435.1 | 1e-109 | PREDICTED: trihelix transcription factor GT-3b-like | ||||
Swissprot | O80450 | 2e-35 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | M0TSB3 | 1e-148 | M0TSB3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P21100_001 | 1e-149 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12595 | 31 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 2e-37 | Trihelix family protein |
Publications ? help Back to Top | |||
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