PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr8P20660_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 253aa MW: 27673.5 Da PI: 10.3111 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.2 | 5.9e-32 | 187 | 244 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh GSMUA_Achr8P20660_001 187 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHA 244 9************************9988****************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 9.4E-18 | 138 | 183 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.3E-34 | 173 | 244 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.998 | 180 | 243 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-27 | 183 | 244 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.3E-39 | 185 | 245 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.9E-28 | 187 | 243 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MEEVEKANRA AVDSCHRVLS LLSQAQDQVQ SGNLLAGTGD AVSRFKRVVS LLSNSAGHGR 60 VRIASKIQIL DSSSGNPLPI NRRSFLENQF GLQASSSSQS FVSSLSMDGS MASLDGKPFH 120 LIGGPASSDP INLHPPPKRR CVCRGEDGNG KCATTGRCHC SKRRKLRVKR SIKVPAISNK 180 LADIPPDEYS WRKYGQKPIK GSPHPRGYYK CSSMRGCPAR KHVERCLEDP SMLIVTYEGE 240 HNHARLLTHS SQT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 178 | 243 | 7 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413919.1 | 1e-170 | PREDICTED: probable WRKY transcription factor 21 | ||||
Refseq | XP_009413922.1 | 1e-170 | PREDICTED: probable WRKY transcription factor 21 | ||||
Refseq | XP_009413923.1 | 1e-170 | PREDICTED: probable WRKY transcription factor 21 | ||||
Refseq | XP_018685280.1 | 1e-170 | PREDICTED: probable WRKY transcription factor 21 | ||||
Swissprot | Q93WU6 | 1e-73 | WRK74_ARATH; Probable WRKY transcription factor 74 | ||||
TrEMBL | M0TS69 | 0.0 | M0TS69_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P20660_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2859 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28650.1 | 2e-70 | WRKY DNA-binding protein 74 |
Publications ? help Back to Top | |||
---|---|---|---|
|