PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P20520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 290aa    MW: 33618.5 Da    PI: 5.0299
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P20520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.95.8e-37401312102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d+++++++sws+++nsfvv+d++ fa ++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g
  GSMUA_Achr8P20520_001  40 FLTKTYDMVDDPSTNQVVSWSQTNNSFVVWDPHAFAMTLLPKYFKHNNFSSFVRQLNTYGFRKMDPDR---------WEFANEGFLRG 118
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +k+ll++ikr++ 
  GSMUA_Achr8P20520_001 119 QKHLLKTIKRRRP 131
                            **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-4036129IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-3636129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-6336129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-204063IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.1E-3340129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-2091103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNPVKEEYQD YSEVSSGSNE IVVDPPRPLE GLHEAGPPPF LTKTYDMVDD PSTNQVVSWS  60
QTNNSFVVWD PHAFAMTLLP KYFKHNNFSS FVRQLNTYGF RKMDPDRWEF ANEGFLRGQK  120
HLLKTIKRRR PHNHPSLQQS LSAYIEEVVK LRQEQQNTRA HLKAMEERLQ LTEQRQQQTM  180
AFLARLMQNP SLLQQLLDQK ERMKELEEAI SKKRRRPIDT APEPDDFHSE EHLAPHENNT  240
DGELNDNFWE ELLNEGLGDE KGTFGIEGVD TEDVNVLADQ LGFLTSTSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-273112917129Heat shock factor protein 1
5d5v_B6e-273112917129Heat shock factor protein 1
5d5v_D6e-273112917129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413903.10.0PREDICTED: heat stress transcription factor A-2b-like
SwissprotQ6VBB21e-115HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLM0TS550.0M0TS55_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P20520_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.14e-88heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]