PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P19990_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 241aa MW: 26285.4 Da PI: 10.5631 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.4 | 3e-35 | 60 | 142 | 2 | 82 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssa 82 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l++++ s+s++ a++ sss GSMUA_Achr8P19990_001 60 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDQLAELPPWSPSATivAAHAASSSP 142 79**************************************************************4444433433333333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.9E-31 | 60 | 136 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.328 | 62 | 120 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGEGHNHHSL GYNQLSLHHH HHQQQQLQRP QPRPRHGGGM RGGVIGEIVE VQGGHIVRST 60 GRKDRHSKVC TAKGPRDRRV RLAAHTAIQF YDVQDRLGYD RPSKAVDWLI KNAKAAIDQL 120 AELPPWSPSA TIVAAHAASS SPGWAEQGQR IAVPLHSVLG QSQFFCQRGP LQSSNSPAIR 180 AWADPVDATT DHRMQPALHP SISTIGFTSG AGFSGLRIPA RFQGEEEHDG ITSKPPSASR 240 N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-21 | 67 | 120 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 8e-21 | 67 | 120 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468863 | 2e-71 | AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence. | |||
GenBank | FQ381831 | 2e-71 | FQ381831.1 Vitis vinifera clone SS0ABG82YF20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009409694.1 | 2e-66 | PREDICTED: transcription factor PCF5-like | ||||
Swissprot | Q8LPR5 | 1e-49 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | M0TS02 | 1e-176 | M0TS02_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P19990_001 | 1e-177 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-42 | TCP family protein |