PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P18980_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 273aa MW: 30949.8 Da PI: 5.8791 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.1 | 1.2e-51 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF P+deelv++yL+kkv+++++ + ++ evd+++ ePw+Lp +k + +ewyfFs rd+kyatg+r+nrat+sgyWkatgk GSMUA_Achr8P18980_001 10 LPPGFRFFPSDEELVCHYLHKKVSNERTCE-GTMVEVDLHTREPWELPDVAKLTANEWYFFSFRDRKYATGSRANRATRSGYWKATGK 96 79************************9666.78***************77777899******************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 d+++ + ++++vg++ktLvfy+grap+g ktdWvmhe+rle GSMUA_Achr8P18980_001 97 DRTISDPtTHATVGMRKTLVFYRGRAPSGAKTDWVMHEFRLE 138 *****9967788***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.018 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGLRDIESTL PPGFRFFPSD EELVCHYLHK KVSNERTCEG TMVEVDLHTR EPWELPDVAK 60 LTANEWYFFS FRDRKYATGS RANRATRSGY WKATGKDRTI SDPTTHATVG MRKTLVFYRG 120 RAPSGAKTDW VMHEFRLETP HSPPKEDWVL CRVFHKKKGE TENENTASSS PALRSSPSSL 180 VDQPMPDFRH ERLSSSSFSI LPQQEPESSS DPFLNLALMQ GSFLGFSPEM GSTAMMGTSL 240 MCEDELGCPL DLGFENGFGE GEMVRYELPK WQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413727.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Refseq | XP_009413729.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 2e-60 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | M0TRQ1 | 0.0 | M0TRQ1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P18980_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-80 | NAC domain containing protein 74 |