PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P18930_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ARF | ||||||||
Protein Properties | Length: 573aa MW: 63231.1 Da PI: 8.5323 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.3 | 1.2e-22 | 93 | 194 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++v GSMUA_Achr8P18930_001 93 FAKTLTQSDANNGGGFSVPRYCAETIfprldysTDPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSIFVNQKKLVAGDSIV 178 89****************************996444444..8********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F + +++ l+++++r+ GSMUA_Achr8P18930_001 179 FL--RAENGDLCIGIRRA 194 **..4488889****996 PP | |||||||
2 | Auxin_resp | 113.1 | 2.6e-37 | 223 | 305 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ a+++++FevvY+Pra+t+eF+vk+ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dpvrWp S+Wr+L+ GSMUA_Achr8P18930_001 223 ASLAASGQPFEVVYYPRAGTPEFCVKAVAVRAAMRIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVSDPVRWPISPWRLLQ 305 567899***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.8E-37 | 85 | 197 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-29 | 87 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.14E-21 | 92 | 193 | No hit | No description |
SMART | SM01019 | 4.8E-22 | 93 | 195 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.605 | 93 | 195 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-21 | 93 | 194 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.8E-32 | 223 | 305 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.343 | 491 | 571 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MKEPPMKDND KCLDSQLWHA CAGGMVQMPA VNSKVYYFPQ GHAEHAQADK ETDEVFAKIQ 60 MVPISNSESD YGEGDGLGLS MNEFDAQEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP 120 RLDYSTDPPV QTVIAKDVHG EVWKFRHIYR GTPRRHLLTT GWSIFVNQKK LVAGDSIVFL 180 RAENGDLCIG IRRAKRGTGG NFASSGGMRG RGRVRADAVV GTASLAASGQ PFEVVYYPRA 240 GTPEFCVKAV AVRAAMRIQW CPGMRFKMAF ETEDSSRISW FMGTISSVQV SDPVRWPISP 300 WRLLQVTWDE PDFLQNVKCV NPWLVELVSH MPAINLAHFS PPRKKPRIPQ HPDLPFEGQF 360 NTPMVARIPL RSGGSPFCCY SDSAPAGIQG ARHANFGLRN LHLNKLQMGL FHAGLHRVDQ 420 ATPNSRISMG VIVGNPTPPQ LVLFGQPILT EQQVSLSKSE NGVSLGVTGK SSTGGDLKKT 480 TYASGELGLE SGHCKVFMES DDVGRTLDLS VFGSYEELYV RLSDMFGIEK LKMMNHVFYK 540 DVAGAVKHTR DEPFSDFMKT ARRLMILTDS GSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-76 | 13 | 326 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413718.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X1 | ||||
Refseq | XP_018685111.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X1 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | M0TRP6 | 0.0 | M0TRP6_MUSAM; Auxin response factor | ||||
STRING | GSMUA_Achr8P18930_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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