PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P18930_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 573aa    MW: 63231.1 Da    PI: 8.5323
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P18930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.2e-2293194199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++v
  GSMUA_Achr8P18930_001  93 FAKTLTQSDANNGGGFSVPRYCAETIfprldysTDPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSIFVNQKKLVAGDSIV 178
                            89****************************996444444..8********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   + +++ l+++++r+
  GSMUA_Achr8P18930_001 179 FL--RAENGDLCIGIRRA 194
                            **..4488889****996 PP

2Auxin_resp113.12.6e-37223305283
             Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ a+++++FevvY+Pra+t+eF+vk+  v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dpvrWp S+Wr+L+
  GSMUA_Achr8P18930_001 223 ASLAASGQPFEVVYYPRAGTPEFCVKAVAVRAAMRIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVSDPVRWPISPWRLLQ 305
                            567899***************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-3785197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-2987199IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-2192193No hitNo description
SMARTSM010194.8E-2293195IPR003340B3 DNA binding domain
PROSITE profilePS5086312.60593195IPR003340B3 DNA binding domain
PfamPF023626.2E-2193194IPR003340B3 DNA binding domain
PfamPF065074.8E-32223305IPR010525Auxin response factor
PROSITE profilePS5174518.343491571IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MKEPPMKDND KCLDSQLWHA CAGGMVQMPA VNSKVYYFPQ GHAEHAQADK ETDEVFAKIQ  60
MVPISNSESD YGEGDGLGLS MNEFDAQEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP  120
RLDYSTDPPV QTVIAKDVHG EVWKFRHIYR GTPRRHLLTT GWSIFVNQKK LVAGDSIVFL  180
RAENGDLCIG IRRAKRGTGG NFASSGGMRG RGRVRADAVV GTASLAASGQ PFEVVYYPRA  240
GTPEFCVKAV AVRAAMRIQW CPGMRFKMAF ETEDSSRISW FMGTISSVQV SDPVRWPISP  300
WRLLQVTWDE PDFLQNVKCV NPWLVELVSH MPAINLAHFS PPRKKPRIPQ HPDLPFEGQF  360
NTPMVARIPL RSGGSPFCCY SDSAPAGIQG ARHANFGLRN LHLNKLQMGL FHAGLHRVDQ  420
ATPNSRISMG VIVGNPTPPQ LVLFGQPILT EQQVSLSKSE NGVSLGVTGK SSTGGDLKKT  480
TYASGELGLE SGHCKVFMES DDVGRTLDLS VFGSYEELYV RLSDMFGIEK LKMMNHVFYK  540
DVAGAVKHTR DEPFSDFMKT ARRLMILTDS GSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-761332651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413718.10.0PREDICTED: auxin response factor 18-like isoform X1
RefseqXP_018685111.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLM0TRP60.0M0TRP6_MUSAM; Auxin response factor
STRINGGSMUA_Achr8P18930_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]