PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P18420_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 288aa MW: 32046.3 Da PI: 8.7974 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.9 | 5.6e-55 | 5 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeel+++yL +kv++ + + +i++vd++++ePwdLp k++ ++kewyfF +d+ky+tg r+nrat++gyWk+tgk GSMUA_Achr8P18420_001 5 LPPGFRFHPTDEELITYYLSRKVTELGFAT-AAIADVDLNRCEPWDLPGKASMGQKEWYFFNLKDRKYPTGLRTNRATDAGYWKTTGK 91 79*************************999.78***************9888999********************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dke+l+ ++ lvg+kktLvfykgrapkgekt Wvmheyrl GSMUA_Achr8P18420_001 92 DKEILH-REVLVGMKKTLVFYKGRAPKGEKTGWVMHEYRL 130 ******.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-63 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.378 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-28 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MQESLPPGFR FHPTDEELIT YYLSRKVTEL GFATAAIADV DLNRCEPWDL PGKASMGQKE 60 WYFFNLKDRK YPTGLRTNRA TDAGYWKTTG KDKEILHREV LVGMKKTLVF YKGRAPKGEK 120 TGWVMHEYRL HTGFPYNGTK EEWVVCRVFK KSSAGKKPQP DSPALLESPC ELAGLINGVQ 180 TNESMYHSNS MLDVNMYMNW VLAPWASGSL GAGFAPTQAI LRALQSYGHK QPEGMETASL 240 SSLVGQGDAM LGSGSRLSFP ASSSTRADCA AGQQQMQSFD QGSNWRGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-56 | 2 | 157 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-56 | 2 | 157 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-56 | 2 | 157 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-56 | 2 | 157 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-56 | 2 | 157 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-56 | 2 | 157 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-56 | 2 | 157 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-56 | 2 | 157 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-56 | 2 | 157 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-56 | 2 | 157 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-56 | 2 | 157 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-56 | 2 | 157 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-56 | 2 | 157 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-56 | 2 | 157 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413666.1 | 0.0 | PREDICTED: NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 2e-75 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | M0TRJ5 | 0.0 | M0TRJ5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P18420_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7919 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 7e-93 | NAC domain containing protein 58 |
Publications ? help Back to Top | |||
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