PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P17380_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 372aa    MW: 42977.9 Da    PI: 7.0118
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P17380_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.97.5e-25104199186
               trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                            +Wt+ +v++Li+a+++++e+  +++         +kk++W+++sk+m+er + +sp+qC++k+++lnkryk+++++ +++ +++++++
  GSMUA_Achr8P17380_001 104 KWTDAMVRLLITAVSYVGEDAPSECggrrkyailQKKGKWKAISKVMAERRCYVSPQQCEDKFNDLNKRYKRLTDILGRGtSCKVVEN 191
                            7********************9988888899999**********************************************6699**** PP

               trihelix  79 cpyfdqle 86 
                             +++d++ 
  GSMUA_Achr8P17380_001 192 PALLDRMS 199
                            ***99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-21102225No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAPCDPDYMM SGASYGVLAL QGNMYMHQGS MIHHPPVCDA FGVSGSHLQE SDHREGVSIM  60
DYHKGERGRT SMSDDDEPIL TEDGVDAQNE AGREKKGCPW QRMKWTDAMV RLLITAVSYV  120
GEDAPSECGG RRKYAILQKK GKWKAISKVM AERRCYVSPQ QCEDKFNDLN KRYKRLTDIL  180
GRGTSCKVVE NPALLDRMSN LSEKMKDDVR KILSSKHLFY EEMCSYHNCN RLNLPADPAL  240
QRSADGDDED GDAEEHNVHG NMVASCFPKR MRHGVNHEEA VFVFSEGSKS TLIQQHWVNY  300
PLQLEEKKLH IQAQMLELEK QRYKWQRFSK KKDRELNMMR MENERMKIEN ERLSLELRQK  360
EMELDLTSMK TQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413538.10.0PREDICTED: uncharacterized protein LOC103994824
TrEMBLM0TR910.0M0TR91_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P17380_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.16e-93sequence-specific DNA binding transcription factors