PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P16070_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21208.6 Da PI: 7.9774 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.2 | 1.1e-09 | 57 | 100 | 10 | 56 |
AP2 10 kkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++ grW++e+r+p+ r r+ lg+f t+e+A +a++ + +l+ge GSMUA_Achr8P16070_001 57 SRGGRWACEVREPR----RkSRICLGTFSTPEMASRAHDVTAMALRGE 100 6789*****99973....35*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-21 | 50 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.647 | 50 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-6 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.85E-18 | 51 | 109 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-14 | 52 | 109 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-14 | 54 | 113 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-5 | 58 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-6 | 89 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MNCDNSSSSS SSSVSTSSSS SSTTRNQHQP APSPKRKAGR KKFRETRHPV YHSVPESRGG 60 RWACEVREPR RKSRICLGTF STPEMASRAH DVTAMALRGE SAQLNFPDSA WTVPRARSAV 120 PEDIRRAATQ SEAAAPRPAP VFVDEEAVFN MPGLMEDMAR GMLVTPPSMQ RGVDWDGAGD 180 ECVWDLSLWT DEL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413459.1 | 1e-117 | PREDICTED: dehydration-responsive element-binding protein 1F-like | ||||
Swissprot | A2WZI4 | 1e-55 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 1e-55 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | M0TQW0 | 1e-138 | M0TQW0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P16070_001 | 1e-139 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 1e-46 | C-repeat/DRE binding factor 1 |
Publications ? help Back to Top | |||
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