PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P15670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 353aa    MW: 38919.6 Da    PI: 6.5766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P15670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.7e-16105151455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn+ E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  GSMUA_Achr8P15670_001 105 VHNMSEKRRRSRINEKMRALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 151
                            6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-1998158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1898155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.657101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-13105151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.38E-17106155No hitNo description
SMARTSM003534.4E-17107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDDHSRTRYG CGSSYTSFQG DQEKISCSSA CVVGSFSRDA EQMPSSSSYP ISAGGDGGSS  60
GKESQDHDFD SLDCESEEGV EAFEEPAKPV PRRSSGSKRS RAAAVHNMSE KRRRSRINEK  120
MRALQNLIPN SNKTDKASML DEAIEYLKQL QLQVQINEIC QACQFHKLLL TKSAELHKSC  180
IENNGSKESQ DSSRRENGTV RIESWKPYIS VEFPSSSIVL IFLQILSMRN GLNLHSMYLS  240
GALQPLQTSQ MCIGFGLNSD MAMNTGTGLL PLNQDSAAQI SFDLSNRWTS SLQSTIEASV  300
FNVTKPEASL FASSHSHHAS FQVPVSCEVE FLLHRNKVIL KNDSIMHICG VLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413453.25e-91PREDICTED: transcription factor HBI1-like isoform X2
RefseqXP_018685753.16e-91PREDICTED: transcription factor HBI1-like isoform X1
TrEMBLM0TQS00.0M0TQS0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P15670_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.17e-29bHLH family protein