PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P15080_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 872aa MW: 95601.4 Da PI: 8.9946 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.1 | 2.4e-30 | 666 | 724 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a Cpv+k+v+r+aed++++++tYeg+Hnh+ GSMUA_Achr8P15080_001 666 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAiACPVRKQVQRCAEDKTILVTTYEGNHNHP 724 8*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55120 | 4.6E-60 | 77 | 267 | IPR020103 | Pseudouridine synthase, catalytic domain |
TIGRFAMs | TIGR00425 | 4.1E-136 | 77 | 354 | IPR004802 | tRNA pseudouridine synthase B family |
CDD | cd02572 | 3.86E-116 | 78 | 243 | No hit | No description |
Pfam | PF01509 | 2.7E-19 | 83 | 199 | IPR002501 | Pseudouridine synthase II, N-terminal |
Pfam | PF16198 | 2.6E-22 | 200 | 266 | IPR032819 | tRNA pseudouridylate synthase B, C-terminal |
TIGRFAMs | TIGR00451 | 1.3E-8 | 265 | 341 | IPR004521 | Uncharacterised domain CHP00451 |
Gene3D | G3DSA:2.30.130.10 | 2.3E-28 | 268 | 351 | IPR015947 | PUA-like domain |
PROSITE profile | PS50890 | 18.736 | 269 | 344 | IPR002478 | PUA domain |
SuperFamily | SSF88697 | 2.76E-22 | 269 | 350 | IPR015947 | PUA-like domain |
Pfam | PF01472 | 5.3E-21 | 270 | 342 | IPR002478 | PUA domain |
SMART | SM00359 | 1.9E-23 | 270 | 344 | IPR002478 | PUA domain |
Gene3D | G3DSA:2.20.25.80 | 8.4E-32 | 650 | 726 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-27 | 658 | 726 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.793 | 660 | 726 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-35 | 665 | 725 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-25 | 666 | 724 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001522 | Biological Process | pseudouridine synthesis | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0009982 | Molecular Function | pseudouridine synthase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 872 aa Download sequence Send to blast |
MSSPSPTAND NKKKKKNKDD QKSAANGGIE RTSLPLLPAA CFGGDQDKDY FIKPQSFTPA 60 VDTSTWPILL KNYDRLNVVA WIKRILRAEK TGHSGTLDPK VTGNLIVCVD RATRLVKSQQ 120 GAGKEYVCVA RLHSAVPDVA KVARALETLT GAVFQRPPLI SAVKRELRIR TIYESKLLEY 180 DPDRHLVVFW ISCQAGTYVR TLCVHLGLIL GVGGHMQELR RVRSGILGEK DNMVTMHDVL 240 DAQWMYDNFK DESYLRRVVM PLEVLLTSYK RLVVKDSAVN AICYGAKLMI PGLLRFENDI 300 EVGEEVVLMT TKGEAIALGI ADMTTAVMAT CDHGSVAKIK RVVMDRDTYP RKWGLGPRAL 360 MKKKMIAEGL LDKHGKPNEK TPAEWLRNVV LPTGGDSMVA SLAAAPESVV QKEEVVFEVV 420 KEKKKNKHKD GTYNDDDGER RKRKLEDAGE VPPVKKVKIE GLQDAILGAE AKKVKDEIGL 480 NLVPSNAQAG QSVIAENEKP ENKVQILTLQ RELSQVNEEN RRLRSMLDQL TKSYTALHTQ 540 LLQVMQQREV HEIRRGQVFC SRGELLAHQF MEPAPTRLLN TGQRQDDDDG EHSSSRNKNS 600 SDRGVVPFPQ THLPHVDASS EHTSPSLEEG KSPRLVHERS TDTASEAPCR RARVSVRARS 660 DAPMINDGCQ WRKYGQKMAK GNPCPRAYYR CTMAIACPVR KQVQRCAEDK TILVTTYEGN 720 HNHPLPPAAT VMANTTSSAA AMLLSGSTTS EDSLMAPAAG SFLHPSTYAS TMAALSASAP 780 FPTITLDLTQ TANQLQLLQR PQHPQQSMVE TVTAAITTDP NFTAALAAAI TSVMGAPGTT 840 NGASGSNAAS IGPAIVPESP QCPKSCTTFS IN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3u28_A | 1e-173 | 48 | 390 | 4 | 387 | H/ACA ribonucleoprotein complex subunit 4 |
3uai_A | 1e-173 | 48 | 390 | 4 | 387 | H/ACA ribonucleoprotein complex subunit 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 422 | 443 | KKKNKHKDGTYNDDDGERRKRK |
2 | 438 | 444 | ERRKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a central role in ribosomal RNA processing. Probable catalytic subunit of H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413282.1 | 0.0 | PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like | ||||
Swissprot | Q9LD90 | 0.0 | CBF5_ARATH; H/ACA ribonucleoprotein complex subunit 4 | ||||
TrEMBL | M0TQL1 | 0.0 | M0TQL1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P15080_001 | 0.0 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 2e-68 | WRKY family protein |