PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P15000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 600aa    MW: 66162.5 Da    PI: 7.4022
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P15000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.92.2e-16741135
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  GSMUA_Achr8P15000_001  7 CHHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                           ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-10156IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-11544No hitNo description
CDDcd002021.03E-15652No hitNo description
PfamPF003203.7E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.121740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139194.1E-8274371IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MGKQGPCHHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLTNYVPLHA REVFDSDELK  60
VPKIKSVPIK PKNEKLQKIQ QGNHKLESEC EMQYCDQNFH KIVEGDISNR SSSGSAISGS  120
DSCLHFGTND ASDLTGSVQS NVCDSIAPSK KIFMTRPKLS VEKLTKDLYS ILHEEQASNL  180
SRSSEDDLLY ESGTALGSFE IGYGGVLIKH PNSESVDEES EASSFPVDKS YIMNEGYSGL  240
SYFPVNIESK GTSLLNSGTD TMKSTTEMAQ DSAKRVKIST EKLNILQDRV SSLSSADLNV  300
IINFESFMKY LTHDEQQLLM KYLPSIDNVK PPESLKSMFT SPQFLETLSY FQQLLQEGTF  360
DLSMSVADAE QRRTLNRLVS LNCTKFQWLD QCQKVKDAPS KKIKGGNGIS SRQRLPGLSI  420
SASLKRHHDR QNQSYSGMKS TMRSPKRVCR SGCTNPPSRC FTRPNSSLIT REAGDMGDFV  480
DHEGACFSPR RIFASPPDRS SMQFIADSSE GDVLLDVPSG VSFPEAELLY DPWEQKTSQI  540
GSPTMSGVEA SVLPSSSFAN KYKGGTCTNS KGVELQNLYV LPLKFRSALC FAAVGCTQSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413269.10.0PREDICTED: GATA transcription factor 26-like isoform X1
TrEMBLM0TQK30.0M0TQK3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P15000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.37e-86GATA transcription factor 26