PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P14610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 385aa    MW: 40570.3 Da    PI: 6.8987
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P14610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29192249359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers  +p++++itY++eHnh+
  GSMUA_Achr8P14610_001 192 DLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCTARKQVERSPINPNMLVITYTSEHNHP 249
                            99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.054185251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-29185251IPR003657WRKY domain
SuperFamilySSF1182906.54E-25188251IPR003657WRKY domain
SMARTSM007744.2E-36190250IPR003657WRKY domain
PfamPF031061.5E-24192249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MESDQGDLAD IVRSGGFAGA SGAAEFPVSD QKLPSEATVL PSPGDRINNL GDPFGCHRDP  60
LLHSGGGQIE VAIESSDGGG GGMIVSRKLR MSEEIIKACD INHRAFRVSS GGAKGSPLPP  120
NAIVPTAVLI GEMTKASDGA AVGCSVDDGG VRISSTRTLG IKRRKNQVKK VVCIPAPTAA  180
SNRHNGEVVP YDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCTARKQVER SPINPNMLVI  240
TYTSEHNHPW PTQRNALAGS TRSQASKNAA SASKTSGHDL KEDEPKETAT GSDALFVKGE  300
VAEKGVHHPA EGDEYDGAVE QSCKPAVIPA SSHPDDFFAD LAELVTDPMS LIFSNETKPA  360
AGGVVALDPS HMFDSAGRWN GRGSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-24165252280Disease resistance protein RRS1
5w3x_D8e-24165252280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413286.10.0PREDICTED: probable WRKY transcription factor 35
TrEMBLM0TQG40.0M0TQG4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P14610_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.18e-74WRKY DNA-binding protein 35