PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P14540_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 28601.1 Da PI: 6.24 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++lv++v+ +G ++W+t +++ g +R +k+c++rw++yl GSMUA_Achr8P14540_001 21 RGAWTAEEDQKLVEYVRAHGDKNWRTLPAKAGINRYGKSCRLRWLNYL 68 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.1e-17 | 74 | 119 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eEd+l+++++++lG++ W++Ia +++ gRt++++k++w+++l GSMUA_Achr8P14540_001 74 RGNISKEEDDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNHWNTHL 119 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.937 | 16 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-13 | 20 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.49E-30 | 20 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-16 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-10 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 25.271 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-16 | 74 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.85E-13 | 78 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MVKKMAERGK KKGVTESVVN RGAWTAEEDQ KLVEYVRAHG DKNWRTLPAK AGINRYGKSC 60 RLRWLNYLRP GIKRGNISKE EDDLIIRLHN LLGNRWSLIA GRLPGRTDNE IKNHWNTHLC 120 KRSLTIDDLN LELNQNVDSA PPFASSHHDF TTGSDAMEEL HLAIMTSPPG GTTHDEPLRL 180 LSPELHLLDL GSVPTLNGGG GNTSNEFGAE AYETGGGDGN GSLDGVMGGI SGTKSDAQAV 240 FDELDRWLIG CEDLALYFLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-30 | 21 | 122 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413212.1 | 0.0 | PREDICTED: myb-related protein 308 | ||||
Refseq | XP_018685496.1 | 0.0 | PREDICTED: myb-related protein 308 | ||||
TrEMBL | M0TQF7 | 0.0 | M0TQF7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P14540_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17778 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-53 | myb domain protein 3 |