PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P14190_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 313aa    MW: 34564.7 Da    PI: 7.7017
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P14190_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-161462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEd +l++ + ++G+g +W + +++ g++R++k+c++rw++yl
  GSMUA_Achr8P14190_001 14 KGPWSPEEDTKLKEFIGKHGTGgNWIALPQKAGLNRCGKSCRLRWLNYL 62
                           79*********************************************97 PP
2Myb_DNA-binding43.76.3e-1469111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +++eE+ ++ ++++  G++ W+ Ia++++ gRt++++k++w++
  GSMUA_Achr8P14190_001  69 GEFSEEEERIICNLFANIGSR-WSIIASHLP-GRTDNDIKNYWNT 111
                            789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.617962IPR017930Myb domain
SuperFamilySSF466891.02E-2711109IPR009057Homeodomain-like
SMARTSM007173.1E-121364IPR001005SANT/Myb domain
PfamPF002492.4E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-231569IPR009057Homeodomain-like
CDDcd001673.19E-91662No hitNo description
PROSITE profilePS5129421.363117IPR017930Myb domain
SMARTSM007173.1E-1367115IPR001005SANT/Myb domain
PfamPF002491.1E-1269111IPR001005SANT/Myb domain
CDDcd001677.75E-1070113No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2370116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRTPCCDKA NVKKGPWSPE EDTKLKEFIG KHGTGGNWIA LPQKAGLNRC GKSCRLRWLN  60
YLRPNIKHGE FSEEEERIIC NLFANIGSRW SIIASHLPGR TDNDIKNYWN TKLKKKFLGI  120
VPSQKKQQHQ LQLQQQQQHH NLFSSLFSLS QGGCNTTAPD LELVAGLGEF PSLISQRIPG  180
FASTSTSATA ASALLQVPYR QPLQMMERSH TTMIAFGNSD PSCNSSGGSC TQISYGTELE  240
YDCDVGRGFE GEQISIDNYA TYGGLEYNSR SLRPGGGGHV ETPLDYTYEE IKHLLSSNSS  300
GCNTINNDNP SLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413142.10.0PREDICTED: myb-related protein 308
TrEMBLM0TQC20.0M0TQC2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P14190_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-73myb domain protein 36