PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P13630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 299aa    MW: 33559.5 Da    PI: 7.7745
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P13630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.3e-22128229199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++ ++ ae+        +++++  ++l+ +d++g +W++k+iyr++++r++lt+GW+ F  a++L +gD+v+
  GSMUA_Achr8P13630_001 128 FCKTLTASDTSTHGGFSVRRRAAEKVfppldfsQQPPA--QELVARDLHGVEWKFKHIYRGQPKRHLLTTGWSVFIGAKRLVAGDSVL 213
                            99*****************************8544444..49********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++ +l+++++r+
  GSMUA_Achr8P13630_001 214 FI--WNEKNQLLLGIRRA 229
                            **..8899999****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-47116257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-40121243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-19127228No hitNo description
PfamPF023625.8E-21128229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674128230IPR003340B3 DNA binding domain
SMARTSM010194.2E-22128230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKLSTVGIGQ QEPEEEEKRC LNSELWHACA GPLVCLPTAG TRVVYFPQGH SEQVAVSTNK  60
EAEGHIPNYP SLPPQLFCQL HNVTMHADPE TDEVYAQMTL QPLRLQEQKD AYFLIEMGVV  120
SKQPVNYFCK TLTASDTSTH GGFSVRRRAA EKVFPPLDFS QQPPAQELVA RDLHGVEWKF  180
KHIYRGQPKR HLLTTGWSVF IGAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NGCFTVFYNP RQLPYSCTCN CLFLVHVQVF IDYSWLKFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1231727447304Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685927.10.0PREDICTED: auxin response factor 12-like
SwissprotQ0J9511e-157ARFL_ORYSJ; Auxin response factor 12
SwissprotQ258Y51e-158ARFL_ORYSI; Auxin response factor 12
TrEMBLM0TQ660.0M0TQ66_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P13630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.11e-156auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi Y, et al.
    OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
    New Phytol., 2012. 193(1): p. 109-20
    [PMID:21973088]
  3. Shen WJ,Ruan XL,Li XS,Zhao Q,Li HP
    RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
    Arch. Virol., 2012. 157(8): p. 1531-9
    [PMID:22592958]
  4. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  5. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]