PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P13440_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 379aa MW: 41427.6 Da PI: 8.3821 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.9e-17 | 43 | 87 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a +q+G W++I +++g ++t+ q++s+ qk+ GSMUA_Achr8P13440_001 43 RERWTEEEHNKFLEALQQYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 87 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.83E-17 | 37 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.86 | 38 | 92 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.4E-17 | 41 | 90 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-13 | 42 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 43 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-10 | 43 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-10 | 45 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MDVDAKTSSM SIPRSKEIDS PVTEQAPRVS SIVRKPYTIT KQRERWTEEE HNKFLEALQQ 60 YGRAWRRIEE HIGTKTAVQI RSHAQKFFSK VNCCFSNYLS IPPPRPKRKP VHPYPRKLSH 120 SSNKEIPALK QLERPRLQSP IICEQDNRSP TSVLSAVGSE TMGSVFSIGQ NGCSSPVIDH 180 CPNAYTSSEA PLPTLKLFGK MVVVTDSNVS SASGAANITQ PQPTSSPPPL LYRFPLVGGH 240 SVEPTFLSPP WWSIYGNLPF SYIDLQPQYP LQFGMEAAGN EDMQREGSWT GSNTASTSGA 300 GLTDPNAVVV NSNKAENVAE SDSMPCTSLK PSSIPASRRG SGGSGRGFVP YNRCAVESEV 360 QQSVTASEDG ESQAIRLCL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413064.1 | 0.0 | PREDICTED: protein REVEILLE 5-like | ||||
TrEMBL | M0TQ47 | 0.0 | M0TQ47_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P13440_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 8e-46 | MYB_related family protein |