PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P13440_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 379aa    MW: 41427.6 Da    PI: 8.3821
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P13440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-174387147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           r rWT+eE+ ++++a +q+G   W++I +++g ++t+ q++s+ qk+
  GSMUA_Achr8P13440_001 43 RERWTEEEHNKFLEALQQYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 87
                           78******************88.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.83E-173791IPR009057Homeodomain-like
PROSITE profilePS5129419.863892IPR017930Myb domain
TIGRFAMsTIGR015571.4E-174190IPR006447Myb domain, plants
SMARTSM007172.9E-134290IPR001005SANT/Myb domain
PfamPF002494.1E-144386IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-104383IPR009057Homeodomain-like
CDDcd001671.23E-104588No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDVDAKTSSM SIPRSKEIDS PVTEQAPRVS SIVRKPYTIT KQRERWTEEE HNKFLEALQQ  60
YGRAWRRIEE HIGTKTAVQI RSHAQKFFSK VNCCFSNYLS IPPPRPKRKP VHPYPRKLSH  120
SSNKEIPALK QLERPRLQSP IICEQDNRSP TSVLSAVGSE TMGSVFSIGQ NGCSSPVIDH  180
CPNAYTSSEA PLPTLKLFGK MVVVTDSNVS SASGAANITQ PQPTSSPPPL LYRFPLVGGH  240
SVEPTFLSPP WWSIYGNLPF SYIDLQPQYP LQFGMEAAGN EDMQREGSWT GSNTASTSGA  300
GLTDPNAVVV NSNKAENVAE SDSMPCTSLK PSSIPASRRG SGGSGRGFVP YNRCAVESEV  360
QQSVTASEDG ESQAIRLCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413064.10.0PREDICTED: protein REVEILLE 5-like
TrEMBLM0TQ470.0M0TQ47_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P13440_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.18e-46MYB_related family protein