PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P13430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 607aa    MW: 68308.6 Da    PI: 5.4817
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P13430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.96.7e-5661331128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lppGfrFhPtdeelvv+yLk+k++g++lel e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nrat++gyWkat
  GSMUA_Achr8P13430_001   6 LPPGFRFHPTDEELVVYYLKRKINGRELEL-EIIPEVDLYKCEPWDLPeKsFLPGKDLEWYFFSPRDRKYPNGSRTNRATQAGYWKAT 92 
                            79***************************9.99**************95334444667****************************** PP

                    NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            gkd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl
  GSMUA_Achr8P13430_001  93 GKDRRVSS-QRRAVGTKKTLVYYRGRAPHGSRTDWVMHEYRL 133
                            *******9.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-643157IPR003441NAC domain
PROSITE profilePS5100561.4216157IPR003441NAC domain
PfamPF023652.5E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MASMSLPPGF RFHPTDEELV VYYLKRKING RELELEIIPE VDLYKCEPWD LPEKSFLPGK  60
DLEWYFFSPR DRKYPNGSRT NRATQAGYWK ATGKDRRVSS QRRAVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDEKECEN AAAGLQDAYA LCRVFKKTAP GPQIVVDHSQ WMSTDRSPTV  180
DLSSDGRGDE FESREMMQGA SLDGSACEDG KWMQYLTEEA FGGGVPCHDP GSFTYMPSKV  240
DVALECARLQ HRLSLPPLEV EDFPRMDLTQ SKAMRSGSFQ EGSNQVDILQ EILSVASASN  300
ELIDDSSYAD MWVGTTNPHL DEFASFLEPT KLIEISDLEE ELKEEEKKKV ENLRGIVVES  360
EERSVRLGSI PTYQFGEAVG IEGEADGRTR SNGVDDDDTK PIFPESGPDD LAVGFLGVHH  420
RHGGDEGRAD HEYEKVEFQR GLFVSHAGMI ETFFHRIEPS KKVSFHLSPV ARGDMAAETH  480
GDAARSRGRF PFFGRVKAFI QDKLIRNEAC QGNGRASEVV EIAALVLSSR TNRSDEAKGQ  540
VMEQEREGGC TTWKKKEENK KSRRGGDCES NVWFPDMRAG RGICRMFLLG KLPFLLSSAL  600
PPHGFRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-57115912167NO APICAL MERISTEM PROTEIN
1ut4_B2e-57115912167NO APICAL MERISTEM PROTEIN
1ut7_A2e-57115912167NO APICAL MERISTEM PROTEIN
1ut7_B2e-57115912167NO APICAL MERISTEM PROTEIN
3swm_A2e-57115915170NAC domain-containing protein 19
3swm_B2e-57115915170NAC domain-containing protein 19
3swm_C2e-57115915170NAC domain-containing protein 19
3swm_D2e-57115915170NAC domain-containing protein 19
3swp_A2e-57115915170NAC domain-containing protein 19
3swp_B2e-57115915170NAC domain-containing protein 19
3swp_C2e-57115915170NAC domain-containing protein 19
3swp_D2e-57115915170NAC domain-containing protein 19
4dul_A2e-57115912167NAC domain-containing protein 19
4dul_B2e-57115912167NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413062.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
TrEMBLM0TQ460.0M0TQ46_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P13430_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-117NAC domain containing protein 28