PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr8P12710_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26364.4 Da PI: 8.7968 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.8e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll + v ++G g W+++++ g++R +k+c++rw +yl GSMUA_Achr8P12710_001 17 KGPWTAQEDKLLTEHVSLHGDGKWNSVSKLTGLRRNGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48 | 2.9e-15 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++ ++++++G++ W+ Iar ++ gRt++++k++w+++ GSMUA_Achr8P12710_001 70 RGNITPQEEIIIQELHALWGNR-WSNIARSLP-GRTDNEIKNYWRTH 114 7999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.832 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-28 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-22 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-9 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 23.868 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.37E-10 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MDGQLGWGTL DNGEWRKGPW TAQEDKLLTE HVSLHGDGKW NSVSKLTGLR RNGKSCRLRW 60 VNYLRPDLKR GNITPQEEII IQELHALWGN RWSNIARSLP GRTDNEIKNY WRTHFKKSKP 120 SKNVEKARAR FLIRQRQEKQ GQEEQQHLHQ GAQQQQADMR AAMKRAEEAA LAEDMEETTY 180 MYSVSCMLQG GGFSGYSSDG STGDGSWGSL WNLGDVPDDL CAVTALYGER R |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-26 | 1 | 118 | 11 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009411382.1 | 1e-172 | PREDICTED: myb-related protein 340 | ||||
TrEMBL | M0TPX4 | 1e-171 | M0TPX4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P12710_001 | 1e-172 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13480.1 | 5e-63 | myb domain protein 79 |