PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr8P12100_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 38166.2 Da PI: 5.6878 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.7 | 2.3e-53 | 5 | 130 | 1 | 125 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrFhPtdeelv +yLkkkv+++k++l +vi+++d+y++ePwdL++ ++ e++ewyfFs++dkky+tg+r+nrat +g+Wka GSMUA_Achr8P12100_001 5 VPPGFRFHPTDEELVGYYLKKKVASQKIDL-DVIRDIDLYRIEPWDLQErcRIGYeEQSEWYFFSHKDKKYPTGTRTNRATMAGFWKA 91 69****************************.9***************953433332566***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125 tg+dk+v++ k++l+g++ktLvfykgrap+g+ktdW+mhe GSMUA_Achr8P12100_001 92 TGRDKAVHD-KNKLIGMRKTLVFYKGRAPNGQKTDWIMHE 130 *********.999**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.1E-55 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.29 | 5 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-27 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:1990110 | Biological Process | callus formation | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
MESCVPPGFR FHPTDEELVG YYLKKKVASQ KIDLDVIRDI DLYRIEPWDL QERCRIGYEE 60 QSEWYFFSHK DKKYPTGTRT NRATMAGFWK ATGRDKAVHD KNKLIGMRKT LVFYKGRAPN 120 GQKTDWIMHE NEKKRKETNV ISHSQEEGWV VCRAFKKRAT CPARSVAAIW NSGYCYDELD 180 RMNSMVNPMM CLQKQPMSLQ CKQETEFEEL HLLHPSQFVQ LPQLESPSLP LVSQPSSKMT 240 VLEKEDEQQQ QQAGMSSGMG SVTDWRALDK FVASQLSHEG GSFVSEQVVS DFGVDNDSEM 300 ALLLLQSERE GFNEFIGSGE PDCDKGICIF EQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-49 | 2 | 158 | 12 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00266 | DAP | Transfer from AT2G18060 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT356872 | 0.0 | KT356872.1 Musa AAB Group cultivar Rasthali vascular related NAC-domain protein 1 (VND1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009411440.1 | 0.0 | PREDICTED: NAC domain-containing protein 37-like | ||||
Swissprot | Q9SL41 | 1e-136 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | M0TPR3 | 0.0 | M0TPR3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P12100_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3625 | 37 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-120 | vascular related NAC-domain protein 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|