PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P11850_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Dof | ||||||||
Protein Properties | Length: 298aa MW: 31606.9 Da PI: 7.7835 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.8 | 2.8e-39 | 47 | 106 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss GSMUA_Achr8P11850_001 47 GQALSCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 106 6889*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-28 | 42 | 104 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.6E-33 | 48 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.236 | 50 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 52 | 88 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MDTAQWHQVR LVKPAEMVSS TATTSGSNSC TTARPQVTER RARPHKGQAL SCPRCNSTNT 60 KFCYYNNYSL TQPRYFCKTC RRYWTEGGSL RNVPVGGGSR KNKRSSVSSS STTTAAAASM 120 ITSSTATATS AFHEGQDLNL AFPHPTLPEF NDFPGLESTT VNNNNNSSNT DNSSNPCNAV 180 GALSAMELLS SGMTARGIGP FVPMTLPEYP TGFGLQDFRA PALSFPMEGI DGGGGEGGTG 240 GYESLQGLQE GAGGRLLFPF EDLKPGVHTS TAEFENNRSQ GGHPPGFWNG MMGGGGSW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN977016 | 1e-45 | JN977016.1 Molineria latifolia clone CL27 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018685232.1 | 1e-170 | PREDICTED: dof zinc finger protein DOF4.6 isoform X1 | ||||
Swissprot | Q9SXG8 | 2e-59 | DOF1_ORYSJ; Dof zinc finger protein 1 | ||||
TrEMBL | M0TPN8 | 0.0 | M0TPN8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P11850_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-44 | Dof family protein |
Publications ? help Back to Top | |||
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