PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P11760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 557aa    MW: 61253.9 Da    PI: 9.1228
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P11760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.91.7e-1517693387
               trihelix 33 evskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                           +vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r+++  + +++f+qlea
  GSMUA_Achr8P11760_001 17 AVSRKLAELGYKRTAKKCKEKFENVHKYYKRTKEGRAGRQDG--KAYRFFSQLEA 69
                           69************************************8555..56*******85 PP
2trihelix1071.3e-33291376187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+k ev+aLi++r+ +++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  GSMUA_Achr8P11760_001 291 RWPKAEVHALIKLRSGLDSRYQEAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESSKNR-PEDSKTCPYFHQLDA 376
                            8********************************************************************98.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-111770No hitNo description
CDDcd122035.35E-30290355No hitNo description
PROSITE profilePS500906.98290348IPR017877Myb-like domain
PfamPF138375.3E-23290377No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MQPSRRILSF SFIMVVAVSR KLAELGYKRT AKKCKEKFEN VHKYYKRTKE GRAGRQDGKA  60
YRFFSQLEAL HGSGGGGANT TAATPLAAAS PTTFIAMPAR VAPEFGPRGI SSSAAAAAAA  120
GGISFSSNSS SSSSSESDDE ETQVAGGSRE GRKRKRRGGS RSRRRMMAFF EGLMQQVMER  180
QEAMQQRFLE AIEKREQDRM KREEAWRLQE MSRLSREQEL LVQERAVAAS RDTAVISYLQ  240
KISGQTIPLP AMPATSIAPL PQSSYTPPQQ QQPPSKPQHH TQVTDPPSSS RWPKAEVHAL  300
IKLRSGLDSR YQEAGPKGPL WEEISAGMRR LGYNRNAKRC KEKWENINKY FKKVKESSKN  360
RPEDSKTCPY FHQLDALYRK KLFGSSSGSG GGGSITVGIP QQQEQEANRS PTSEEQHRQQ  420
PPAEAPGKSG NDNGNGNGGN AEAGGGPAGI CAQTSNGGPP PSFFDEGMKK PEDIVKELMD  480
QRRHQPVMGD YDKMDEPDSD NLEDDDDDDD DDNDDDDDED RKMQYKIQFQ RQNVSGGGGG  540
NSSTTATAPG SFLAIVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12735KRTAKKCKE
2151156RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411482.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
SwissprotQ391174e-98TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLM0TPM90.0M0TPM9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P11760_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.27e-72Trihelix family protein