PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P11590_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 318aa    MW: 36408.4 Da    PI: 8.5728
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P11590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.42.3e-56201491129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 
                            +ppGfrFhPtdeelv++yL+kkv++++++l ++ik++d+yk+ePwdL+   k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wka
  GSMUA_Achr8P11590_001  20 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-DIIKDIDLYKIEPWDLQVkcKIGTeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKA 106
                            69****************************.99**************952444443555***************************** PP

                    NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            tg+dk+++s k++l+g++ktLvfy+grap+g+k+dW+mheyrle
  GSMUA_Achr8P11590_001 107 TGRDKPIYS-KNSLIGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 149
                            *********.8899****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-6117169IPR003441NAC domain
PROSITE profilePS5100559.53120169IPR003441NAC domain
PfamPF023657.7E-2921148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MILQAAAIQS PGKMDTLSHV PPGFRFHPTD EELVDYYLRK KVASRRIDLD IIKDIDLYKI  60
EPWDLQVKCK IGTEEQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KPIYSKNSLI  120
GMRKTLVFYR GRAPNGQKSD WIMHEYRLEA NENAPPQAKG WVVCRVFIKR IAPVIRRAIG  180
APPEMAYHHH HPLFSCKPEL EVRHHHLPQF DSFLQLPQLE SPNLPFSLVA QEDPMIQPSK  240
QLQIFSTCNN SQGIIHHAAE QATDWRVFDK FVASQLSHGD VCRELNCSSS GSDFQKLEAN  300
VEHASASNSS GGQTELWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-501917014169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411505.10.0PREDICTED: NAC domain-containing protein 7-like
RefseqXP_018685503.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-114NAC7_ARATH; NAC domain-containing protein 7
TrEMBLM0TPL20.0M0TPL2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P11590_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-94NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]