PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr8P11590_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 36408.4 Da PI: 8.5728 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.4 | 2.3e-56 | 20 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrFhPtdeelv++yL+kkv++++++l ++ik++d+yk+ePwdL+ k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wka GSMUA_Achr8P11590_001 20 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-DIIKDIDLYKIEPWDLQVkcKIGTeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKA 106 69****************************.99**************952444443555***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tg+dk+++s k++l+g++ktLvfy+grap+g+k+dW+mheyrle GSMUA_Achr8P11590_001 107 TGRDKPIYS-KNSLIGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 149 *********.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-61 | 17 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.531 | 20 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-29 | 21 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 318 aa Download sequence Send to blast |
MILQAAAIQS PGKMDTLSHV PPGFRFHPTD EELVDYYLRK KVASRRIDLD IIKDIDLYKI 60 EPWDLQVKCK IGTEEQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KPIYSKNSLI 120 GMRKTLVFYR GRAPNGQKSD WIMHEYRLEA NENAPPQAKG WVVCRVFIKR IAPVIRRAIG 180 APPEMAYHHH HPLFSCKPEL EVRHHHLPQF DSFLQLPQLE SPNLPFSLVA QEDPMIQPSK 240 QLQIFSTCNN SQGIIHHAAE QATDWRVFDK FVASQLSHGD VCRELNCSSS GSDFQKLEAN 300 VEHASASNSS GGQTELWK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-50 | 19 | 170 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009411505.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Refseq | XP_018685503.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-114 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | M0TPL2 | 0.0 | M0TPL2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P11590_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2370 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G12260.1 | 2e-94 | NAC 007 |
Publications ? help Back to Top | |||
---|---|---|---|
|