PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P11340_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 31301.9 Da PI: 6.8738 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l +++ ++G g+W++++++ g+ R +k+c++rw +yl GSMUA_Achr8P11340_001 15 RGLWSPEEDQKLREYILKHGHGCWSSVPAKAGLQRDGKSCRLRWINYL 62 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.4e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+e ++++ lG++ W++Ia +++ gRt++++k++w++yl GSMUA_Achr8P11340_001 68 RGSFSPDEQETVMKLHAALGNK-WSLIATHLP-GRTDNEVKNHWNSYL 113 899*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.766 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.79E-29 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.26E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.352 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.36E-10 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGCRTCGRPE VKHRRGLWSP EEDQKLREYI LKHGHGCWSS VPAKAGLQRD GKSCRLRWIN 60 YLRPGLKRGS FSPDEQETVM KLHAALGNKW SLIATHLPGR TDNEVKNHWN SYLKKKAVEI 120 DGSTSSCSST SFTASSSQSS MIESRVPENL NNEVPFPASS EDGYSSLFVS QLTSHGCSSF 180 GTPQPPVAKV IFADWLPADH ANDHISSCFL EEHHQLCQET LQPKSSQAAL YEDWRYLSGH 240 NLSHSDISGV ETLQVDETSQ SEMEKRWATH QILFPWFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009412856.1 | 0.0 | PREDICTED: transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 1e-55 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | M0TPI7 | 0.0 | M0TPI7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P11340_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 9e-58 | myb domain protein 18 |
Publications ? help Back to Top | |||
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