PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P11340_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 278aa    MW: 31301.9 Da    PI: 6.8738
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P11340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161562148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg W++eEd++l +++ ++G g+W++++++ g+ R +k+c++rw +yl
  GSMUA_Achr8P11340_001 15 RGLWSPEEDQKLREYILKHGHGCWSSVPAKAGLQRDGKSCRLRWINYL 62
                           788*******************************************97 PP

2Myb_DNA-binding54.62.4e-1768113148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+++++E+e   ++++ lG++ W++Ia +++ gRt++++k++w++yl
  GSMUA_Achr8P11340_001  68 RGSFSPDEQETVMKLHAALGNK-WSLIATHLP-GRTDNEVKNHWNSYL 113
                            899*******************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7661062IPR017930Myb domain
SuperFamilySSF466896.79E-2913109IPR009057Homeodomain-like
SMARTSM007173.7E-121464IPR001005SANT/Myb domain
PfamPF002493.9E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-221669IPR009057Homeodomain-like
CDDcd001674.26E-101862No hitNo description
PROSITE profilePS5129427.35263117IPR017930Myb domain
SMARTSM007173.7E-1567115IPR001005SANT/Myb domain
PfamPF002495.5E-1668113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2570116IPR009057Homeodomain-like
CDDcd001677.36E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGCRTCGRPE VKHRRGLWSP EEDQKLREYI LKHGHGCWSS VPAKAGLQRD GKSCRLRWIN  60
YLRPGLKRGS FSPDEQETVM KLHAALGNKW SLIATHLPGR TDNEVKNHWN SYLKKKAVEI  120
DGSTSSCSST SFTASSSQSS MIESRVPENL NNEVPFPASS EDGYSSLFVS QLTSHGCSSF  180
GTPQPPVAKV IFADWLPADH ANDHISSCFL EEHHQLCQET LQPKSSQAAL YEDWRYLSGH  240
NLSHSDISGV ETLQVDETSQ SEMEKRWATH QILFPWFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412856.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K41e-55LAF1_ARATH; Transcription factor LAF1
TrEMBLM0TPI70.0M0TPI7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P11340_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.19e-58myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]