PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P10800_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 256aa    MW: 28964.5 Da    PI: 5.7082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P10800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.2e-192370148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT+eEd+ l ++v+ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GSMUA_Achr8P10800_001 23 RGPWTAEEDLVLMNYVAAHGEGRWNSLARCSGLRRTGKSCRLRWLNYL 70
                           89********************************************97 PP

2Myb_DNA-binding551.9e-1776119146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ T+eE++l++++++++G++ W++Ia++++ gRt++++k++w++
  GSMUA_Achr8P10800_001  76 RGNITPEEQLLILQLHTRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 119
                            7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3941870IPR017930Myb domain
SuperFamilySSF466891.04E-3120117IPR009057Homeodomain-like
SMARTSM007172.5E-142272IPR001005SANT/Myb domain
PfamPF002495.1E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-232477IPR009057Homeodomain-like
CDDcd001671.75E-102570No hitNo description
PROSITE profilePS5129423.61471125IPR017930Myb domain
SMARTSM007171.0E-1475123IPR001005SANT/Myb domain
PfamPF002491.6E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2378124IPR009057Homeodomain-like
CDDcd001675.25E-1180119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEFHGRTCGS FMAQSEEEVD LRRGPWTAEE DLVLMNYVAA HGEGRWNSLA RCSGLRRTGK  60
SCRLRWLNYL RPDVRRGNIT PEEQLLILQL HTRWGNRWSK IAQYLPGRTD NEIKNYWRTR  120
VQKHAKQLRC DVNSKQFKDA MTYVWMPRLV ERIRAASGVS TTAPAGPVAE VELVMKPSPE  180
ESSTPSSSFG AEFPPAPPVF DTFPAAAAAA TQSGEGELPG WWSESGDTDL GLPDFDHSVW  240
GDDLWSAEDI WLQQQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-262012324126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411608.10.0PREDICTED: transcription factor MYB108
SwissprotQ10MB41e-89MYB2_ORYSJ; Transcription factor MYB2
TrEMBLM0TPD30.0M0TPD3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P10800_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-85myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]