PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P10740_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 313aa    MW: 34071.2 Da    PI: 6.7865
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P10740_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.75.5e-34149207159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK vk+s+fprsYYrCtsa+C vkk+vers++dp vv++tYeg+Hnh+
  GSMUA_Achr8P10740_001 149 LDDGYRWRKYGQKAVKNSRFPRSYYRCTSATCGVKKRVERSSDDPAVVVTTYEGQHNHP 207
                            59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-34134209IPR003657WRKY domain
SuperFamilySSF1182902.88E-29142209IPR003657WRKY domain
PROSITE profilePS5081131.709144209IPR003657WRKY domain
SMARTSM007745.7E-40149208IPR003657WRKY domain
PfamPF031064.5E-27150207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEEPAAEIPL PFSAQSPSTF PPPRGTFLDA DGSDRGFLEL IGLQELHQSS FLFQQPAARA  60
TCVASAPPPV QAKSSDAVNF PANPSSMSCS STETGANPTK PATAGEANEQ EAETKECKEE  120
GGKKKKKKGQ KPQKEPRFAF ETRSEVDHLD DGYRWRKYGQ KAVKNSRFPR SYYRCTSATC  180
GVKKRVERSS DDPAVVVTTY EGQHNHPSPV VPRGAHHAPP PQPPLLPAEP SMPPPLGFVF  240
SPPVNTKEFQ LPLLSSYLAP PPLDFNRSAA PRTLVVTSDL TASIEGRNQT AESAIRDDGL  300
LQDLIPSEIR KEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-28139209777Probable WRKY transcription factor 4
2lex_A2e-28139209777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412861.20.0PREDICTED: probable WRKY transcription factor 48 isoform X2
TrEMBLM0TPC70.0M0TPC7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P10740_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.17e-42WRKY DNA-binding protein 48