PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P10470_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 371aa MW: 40204.6 Da PI: 4.57 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l+++++ G g+W++ ++ g+ R++k+c++rw +yl GSMUA_Achr8P10470_001 14 KGRWTAEEDEILAKYIAANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.5e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+ ++++++ lG++ W+ Ia +++ gRt++++k++w+++l GSMUA_Achr8P10470_001 67 RGNITKEEEAVIIKLHATLGNR-WSVIAGHLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.429 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.65E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.60E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.61 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.08E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTAE EDEILAKYIA ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGNI TKEEEAVIIK LHATLGNRWS VIAGHLPGRT DNEIKNYWNS HLSRRIDSFR 120 RLGLDGGDAA VLDLSTLPGA GKRRGGRTSR SAARKNNIGG AVGRGQQQQQ GVVVSPPVSL 180 VQSDHSVVLD PDQNQASSVT NDGLVDAYEE MASELLCCTS PMDGRLWGTD AEMEHVLLGP 240 GEESMAGRGW FHEGDSGVMT SSEERGGLVT VTSGPEEGGA TGLGVETGPE LVTKGEEEVG 300 SSSSQAEKLL DWDLEDMEAE LWDEAGDMWW HSEHQDLGLH GFDDGGYQEE PLDSWLIFSG 360 TSLGDVTALG W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 12 | 118 | 5 | 110 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009411640.1 | 0.0 | PREDICTED: myb-related protein P-like | ||||
TrEMBL | M0TPA0 | 0.0 | M0TPA0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P10470_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 1e-72 | myb domain protein 111 |