PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P10470_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 371aa    MW: 40204.6 Da    PI: 4.57
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P10470_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +grWT+eEde+l+++++  G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr8P10470_001 14 KGRWTAEEDEILAKYIAANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                           79******************************99************97 PP

2Myb_DNA-binding50.35.5e-1667112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+ T+eE+  ++++++ lG++ W+ Ia +++ gRt++++k++w+++l
  GSMUA_Achr8P10470_001  67 RGNITKEEEAVIIKLHATLGNR-WSVIAGHLP-GRTDNEIKNYWNSHL 112
                            7999******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.429961IPR017930Myb domain
SuperFamilySSF466897.65E-2811108IPR009057Homeodomain-like
SMARTSM007173.0E-121363IPR001005SANT/Myb domain
PfamPF002499.2E-151461IPR001005SANT/Myb domain
CDDcd001675.60E-91661No hitNo description
PROSITE profilePS5129424.6162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2565116IPR009057Homeodomain-like
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002494.4E-1467112IPR001005SANT/Myb domain
CDDcd001678.08E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEILAKYIA ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI TKEEEAVIIK LHATLGNRWS VIAGHLPGRT DNEIKNYWNS HLSRRIDSFR  120
RLGLDGGDAA VLDLSTLPGA GKRRGGRTSR SAARKNNIGG AVGRGQQQQQ GVVVSPPVSL  180
VQSDHSVVLD PDQNQASSVT NDGLVDAYEE MASELLCCTS PMDGRLWGTD AEMEHVLLGP  240
GEESMAGRGW FHEGDSGVMT SSEERGGLVT VTSGPEEGGA TGLGVETGPE LVTKGEEEVG  300
SSSSQAEKLL DWDLEDMEAE LWDEAGDMWW HSEHQDLGLH GFDDGGYQEE PLDSWLIFSG  360
TSLGDVTALG W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23121185110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411640.10.0PREDICTED: myb-related protein P-like
TrEMBLM0TPA00.0M0TPA0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P10470_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-72myb domain protein 111