PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P07630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 398aa    MW: 44663.1 Da    PI: 7.6581
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P07630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix864.4e-2788172186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            rW++qe+l+L+e+r+++++++r++++++plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++ +qle
  GSMUA_Achr8P07630_001  88 RWPRQETLTLLEVRSRLDSSFREAARRGPLWDEVSRIMaEEHGYRRSGKKCREKLENLYKYYKKTKEGKAGR--QDGKHYRFCRQLE 172
                            8*************************************999*****************************98..5555699999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.64486146IPR017877Myb-like domain
PfamPF138372.3E-1888173No hitNo description
CDDcd122035.16E-2088153No hitNo description
PROSITE profilePS500904.077316398IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDLHELHDLI AERKPRFTSV SDLLANQALF MGQRYRFVPA ACPEQYGMFM PGTGSEVGLP  60
PQPPPPPPPA TECFEFSGGG GGGGGQGRWP RQETLTLLEV RSRLDSSFRE AARRGPLWDE  120
VSRIMAEEHG YRRSGKKCRE KLENLYKYYK KTKEGKAGRQ DGKHYRFCRQ LEALYGESSN  180
IVATEINQRC SDHATNAAAT LPAADRGACK APKLSWSISL SSSGECNEAS STEEEVDGST  240
GRLIKTGGES WKSKVEEFIG AQIKRLMEAQ ATWMNQMLKT LEHMELARIS REEDWRREEA  300
ARLDRERILR AGERAWSEAR DAAIVQALEK MSRRELKPRP REETNGNFWT DDNSMAPRWP  360
SREGRRGEGG LGVEVPAAVA CVGCSSSSTE RCKEKWDE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412898.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS07e-78PTL_ARATH; Trihelix transcription factor PTL
TrEMBLM0TNG60.0M0TNG6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P07630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2292266
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.13e-52Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]