PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P07230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 236aa    MW: 25754.5 Da    PI: 9.9029
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P07230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.66.6e-231963145
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                           krie++  rqv fskRr+g++KKA+ELSvLC+ae a+i+fs+ gk
  GSMUA_Achr8P07230_001 19 KRIESEEARQVCFSKRRAGLFKKANELSVLCGAELALIVFSPAGK 63
                           79*****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-361170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.61171IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-291183IPR002100Transcription factor, MADS-box
CDDcd002653.81E-401280No hitNo description
PRINTSPR004041.3E-211333IPR002100Transcription factor, MADS-box
PfamPF003191.6E-262067IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-213348IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-214869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MMMPRKRKTS MGRQKIEIKR IESEEARQVC FSKRRAGLFK KANELSVLCG AELALIVFSP  60
AGKPFSFGHP SVDSIVDRFL SRGPAPAPPP PPHPLPLPLP PHAAAASADR RMLVPARPSA  120
VHELDRQYSE LTERLEAERR RREALEAALR GQRGAAAHLL NANVEELGLA ELEQLQGSLE  180
SLRWDAARRV DQLVFEAQTR SLVMAGDAGG SGFVATAEGS MVIPPHGGFN YGYGSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-181179169MEF2 CHIMERA
6byy_B3e-181179169MEF2 CHIMERA
6byy_C3e-181179169MEF2 CHIMERA
6byy_D3e-181179169MEF2 CHIMERA
6bz1_A3e-181179169MEF2 CHIMERA
6bz1_B3e-181179169MEF2 CHIMERA
6bz1_C3e-181179169MEF2 CHIMERA
6bz1_D3e-181179169MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412905.11e-170PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM0TNC61e-168M0TNC6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P07230_0011e-169(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-31AGAMOUS-like 61