PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P07120_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 301aa MW: 33447.1 Da PI: 9.6384 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.9 | 1.6e-52 | 15 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhP+deelv++yL kkv+g++ l +++ +vd++k+ePw+Lp+++ + +ewyfF rd+kyatg+r+nrat+sgyWka GSMUA_Achr8P07120_001 15 LPPGFRFHPRDEELVCDYLMKKVAGDDgggLYGCHMMIHVDLNKCEPWHLPEMACVGGREWYFFNLRDRKYATGQRTNRATRSGYWKA 102 79***********************99988444477999************7666789****************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd++v + +g lvg++ktLvfy+grapkg+kt+W+mhe+r+ GSMUA_Achr8P07120_001 103 TGKDRTVSR-RGVLVGMRKTLVFYQGRAPKGRKTNWIMHEFRM 144 *******99.99*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.55E-60 | 3 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.138 | 15 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-27 | 16 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MSITMSHLSM MEARLPPGFR FHPRDEELVC DYLMKKVAGD DGGGLYGCHM MIHVDLNKCE 60 PWHLPEMACV GGREWYFFNL RDRKYATGQR TNRATRSGYW KATGKDRTVS RRGVLVGMRK 120 TLVFYQGRAP KGRKTNWIMH EFRMAGSAPH PHKTPLMEDM VLCRVFQKSR SATSEPTKAP 180 PGNGEAAASS SLPPPMDSFA AFEHQPPASS EVHKQVSAFS DLAPHCGAND GAINPRFMVQ 240 RSLQIKNSGS SVLSYSTELE GNPKREVPPS PCMAARSSGS YFTENGLSYV RNPFGAFYAT 300 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-53 | 10 | 172 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-53 | 10 | 172 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-53 | 10 | 172 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-53 | 10 | 172 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-53 | 10 | 172 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-53 | 10 | 172 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-53 | 10 | 172 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-53 | 10 | 172 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-53 | 10 | 172 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-53 | 10 | 172 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-53 | 10 | 172 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-53 | 10 | 172 | 15 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-53 | 10 | 172 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-53 | 10 | 172 | 12 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009412039.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 2e-81 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | M0TNB5 | 0.0 | M0TNB5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P07120_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 7e-84 | NAC domain containing protein 1 |