PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P05880_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 315aa MW: 33757.1 Da PI: 6.7671

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P05880_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.6	1.8e-30	103	156	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl GSMUA_Achr8P05880_001 103 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 156 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.059	100	159	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-20	100	160	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-30	102	161	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-24	104	156	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	106	155	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MREEEETEWF ARWEEHLPSP EELTPLSQTL ITPALAIAFD IPIPADGNPS PILSPHFLHR 60 PLPPPASPHL PPPPDFETSD LNSASAASGS GGGGDEPART LKRPRLVWTP QLHKRFVDAV 120 AHLGIKNAVP KTIMQLMSVD GLTRENVASH LQKYRLYLKR MQGLSTSGGG GGGPISASDA 180 ATDQLFASAP VPHHFLSRRP VAGLGGPDPF LPYMPVTALQ HHQQITAAMQ QQQHYHQRHL 240 GHFGSPTGGG GFDHGFLNRP AVSQSGMHQM LGAAPGMGLM QLTPSSAASF VDDLEPARGG 300 SGERKVLTLF PTGED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	1e-32	103	159	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT060585	1e-70	BT060585.2 Zea mays full-length cDNA clone ZM_BFb0019C20 mRNA, complete cds.
GenBank	BT086588	1e-70	BT086588.1 Zea mays full-length cDNA clone ZM_BFc0188H07 mRNA, complete cds.
GenBank	JX469987	1e-70	JX469987.1 Zea mays subsp. mays clone UT3347 G2-like transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412190.2	0.0	PREDICTED: transcription factor PCL1-like isoform X1
Refseq	XP_018685313.1	0.0	PREDICTED: transcription factor PCL1-like isoform X2
Swissprot	O22210	3e-57	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	M0TMZ1	0.0	M0TMZ1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P05880_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1620	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	5e-52	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]