PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P05800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 332aa    MW: 37063.9 Da    PI: 8.233
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P05800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-104889546
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46
                           k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L+
  GSMUA_Achr8P05800_001 48 KTLRRLAQNREAARKSRLRKKAYVQQLETSRMKLTQLEQELQ 89
                           7889************************98888887776554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-844107IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154690IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.25E-74891No hitNo description
PfamPF001701.6E-74889IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.0E-84992No hitNo description
PROSITE patternPS0003605166IPR004827Basic-leucine zipper domain
PfamPF141448.0E-32130206IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MADTSPRTDT STDVDTDDKD QMLEQGQLAV VAASDSSDRS KDKTLDQKTL RRLAQNREAA  60
RKSRLRKKAY VQQLETSRMK LTQLEQELQR ARQQGIFISS SGDQTHAMGG NGALAFDVEY  120
ARWLEEHNRQ INELRTAVTA HASENDLRVI VDGIMAHYDE KFKLKGVAAK ADVFHILSGM  180
WKTPAERCFL WLGGFRSSEL LKLLASQLEP LTEQQVMGIC NLQQSSQQAE DALSQGMEAL  240
QQSLAETLAG SLGPSGSSGN VANYMGQMAM AMGKLGTLES FLRQADNLRQ QTLQQMHRIL  300
TTRQSARALL AINDYFSRLR ALSSLWLARP RE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5825520.0KF582552.1 Musa acuminata AAA Group cultivar Cavendish bzip transcription factor (TGA1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412198.10.0PREDICTED: transcription factor TGA2.3
RefseqXP_018685828.10.0PREDICTED: transcription factor TGA2.3
RefseqXP_018685829.10.0PREDICTED: transcription factor TGA2.3
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLM0TMY30.0M0TMY3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P05800_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.51e-150TGACG motif-binding factor 6