PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P03620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 316aa    MW: 35514.3 Da    PI: 5.6451
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P03620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS54.52.3e-17215303293
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++lL++cAea+s+++  + + l+++ +  +s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s+e l++++++++++P
  GSMUA_Achr8P03620_001 215 KQLLIKCAEALSENKIDKFELLVEEARGVVSISGEPIQRLGAYMLEGLVARHESSGTSIYHALRCREPE---SKELLSYMRILYDICP 299
                            699*****************************************************************9...9*************** PP

                   GRAS  90 ilkf 93 
                            +l+ 
  GSMUA_Achr8P03620_001 300 YLNT 303
                            *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.426188316IPR005202Transcription factor GRAS
PfamPF035147.9E-15215303IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MIPKKQLIIQ LIIFRYISPI DAHPSSMDLH QFYGLSGTDI SYEFPSPRNL ACAEWTFDSI  60
KLAIGNSLSS PFSSQFECDN FSAISDGKGQ TEWYSSPLDN DGALMQSQVR LLPDTQVPSE  120
SVHAVSSQRI RYALQEIETV LMAPDTCEPI DPDLNKDKPP QLRKQGSRTR TREVQFESSD  180
PAQPQSLSVT YLDMSHEIRP EKRLKKIKFA GGDVKQLLIK CAEALSENKI DKFELLVEEA  240
RGVVSISGEP IQRLGAYMLE GLVARHESSG TSIYHALRCR EPESKELLSY MRILYDICPY  300
LNTCRELHSS ASPHTG
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412448.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG11e-78CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLM0TMB40.0M0TMB4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P03620_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.14e-30SCARECROW-like 21
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]