PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P03510_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 319aa    MW: 36268.2 Da    PI: 6.2836
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P03510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding636.1e-201360148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg W++eEde+l+++v+ +G g+W+tI+++ g+ R++k+c++rw +yl
  GSMUA_Achr8P03510_001 13 RGLWSPEEDEKLIQYVTAHGHGCWSTIPKEAGLQRCGKSCRLRWINYL 60
                           788*******************************************97 PP
2Myb_DNA-binding54.13.6e-1766109146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +g++++eE+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
  GSMUA_Achr8P03510_001  66 KGSFSEEEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                            799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-28563IPR009057Homeodomain-like
PROSITE profilePS5129419.973860IPR017930Myb domain
SuperFamilySSF466893.39E-3010107IPR009057Homeodomain-like
SMARTSM007179.4E-151262IPR001005SANT/Myb domain
PfamPF002494.1E-171360IPR001005SANT/Myb domain
CDDcd001671.94E-121660No hitNo description
PROSITE profilePS5129427.54661115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2664116IPR009057Homeodomain-like
SMARTSM007173.4E-1765113IPR001005SANT/Myb domain
PfamPF002498.8E-1666110IPR001005SANT/Myb domain
CDDcd001671.92E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGHRCCSKQK VKRGLWSPEE DEKLIQYVTA HGHGCWSTIP KEAGLQRCGK SCRLRWINYL  60
KPDLKKGSFS EEEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC LKKKLIAQGL  120
DPMTHNLIPA SRSSTGNNSD ELSQLHCTST TPFTITSPIK SFDKMKKSID LNPHLLSLPH  180
ASTFPFPEIL PPVSNFQFKD SHELMSFKDQ NFTDGFASLD QTNISSTSLN QPSFMDDCMW  240
DRTMEALEAL KQSEVGHAVG KDQMQVQPTM CEMDFSEANE KGPVIMETST FELEMLDNTL  300
FPCGEFRNGS SMEQLQWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-33131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412460.10.0PREDICTED: transcription factor MYB46-like isoform X2
TrEMBLM0TMA30.0M0TMA3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P03510_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.16e-83myb domain protein 67