PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P02840_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 307aa MW: 32792.8 Da PI: 9.4032

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P02840_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	3.9e-39	58	116	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++l+cprCdstntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk k+ GSMUA_Achr8P02840_001 58 QQQNLRCPRCDSTNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKTKA 116 68999***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.2E-33	60	116	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-25	62	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	62	116	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	64	100	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MIQGLLGGSM EERKLSHAGG LLIHPSSSVS PASSVSSQSQ SSSTSSLSSA TAEKQQQQQQ 60 NLRCPRCDST NTKFCYYNNY NLTQPRHFCK TCRRYWTKGG ALRNVPIGGG CRKTKAAPAI 120 AAAGAGGKSA GATKAKPASS DLLLRSALTA GLETELSRSS ILWASPHTSH LMDLLRSATT 180 IQNPNPSLNS TPNLNLNSGR LKEDRQLLGA QTVAETGGTL NAHAPSLDSL QGQLGLVLGD 240 MPISEIQDMY RRFKSSSNYY NEHAGMVTTS TTPSMMDPIP HPVGEFGYWN QALAWSDLPT 300 PNGAVFH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC186748	2e-87	AC186748.1 Musa acuminata clone MA4_8L21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412517.1	1e-179	PREDICTED: dof zinc finger protein DOF3.7-like
TrEMBL	M0TM36	0.0	M0TM36_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P02840_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	7e-32	Dof family protein