PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P02600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 282aa    MW: 30039.4 Da    PI: 9.8228
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P02600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.53e-3869129262
                 zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                            +e+  kcprCds++tkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGg++r+nk+++
  GSMUA_Achr8P02600_001  69 PEQPHKCPRCDSSDTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGACRRNKRNK 129
                            68899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2953122IPR003851Zinc finger, Dof-type
PfamPF027015.7E-3271127IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0573127IPR003851Zinc finger, Dof-type
PROSITE patternPS01361075111IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVFSSVPTYL DPPERNQVCF LAAAGGGSEA SQLFPRLEAQ GTEAGVAAAG SARPISMAER  60
ALLAKIPHPE QPHKCPRCDS SDTKFCYFNN YSLSQPRHFC KTCRRYWTRG GALRNVPVGG  120
ACRRNKRNKS SGSSSKSTAT TSTADRRAGT SSSSSTAAGG GNAERPFFSA MHTLVDPAGY  180
QVGRSSLGVG LERWRKPQIQ QFPFLGGLEP RPEPPAYRLN GEGVVSAKIE DNSHGLRLPR  240
QCSDLLGTEQ YWSGGGGEGG STNSGGWATQ LSVFSSSTKN IS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685732.11e-171PREDICTED: dof zinc finger protein DOF5.1-like isoform X1
SwissprotQ9M2U12e-43DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLM0TM120.0M0TM12_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P02600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-36OBF-binding protein 3