PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P02380_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 299aa    MW: 33228.8 Da    PI: 8.4564
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P02380_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.7e-113785248
                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                           g+WT+eE +++  a +++ ++   +W+ +a+ ++ g+t+ ++ s+++++l
  GSMUA_Achr8P02380_001 37 GNWTPEENKRFEYALAKFDKDtpdRWEQVAASIP-GKTAWDVESHYRDLL 85
                           89********************************.************986 PP
2Myb_DNA-binding42.31.7e-13144188347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT++E+++++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  GSMUA_Achr8P02380_001 144 PWTEDEHKRFLFGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 188
                            8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.3293487IPR017884SANT domain
SMARTSM007176.9E-113587IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-123791IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-63786IPR009057Homeodomain-like
PfamPF002496.5E-93785IPR001005SANT/Myb domain
CDDcd001673.34E-83885No hitNo description
Gene3DG3DSA:1.10.10.603.9E-11135189IPR009057Homeodomain-like
PROSITE profilePS5129418.121137193IPR017930Myb domain
SuperFamilySSF466896.75E-17139193IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-17140191IPR006447Myb domain, plants
SMARTSM007171.2E-10141191IPR001005SANT/Myb domain
CDDcd001677.83E-9144189No hitNo description
PfamPF002491.2E-11144188IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTTRSWMEVL PPATVPCYPS SSWFIGEKMS GGGIGGGNWT PEENKRFEYA LAKFDKDTPD  60
RWEQVAASIP GKTAWDVESH YRDLLDDVSD IEAGRIPCPG YDSSSFTLDW ETNYGFEAST  120
QPYCIGGKRS AARASDQERK KGVPWTEDEH KRFLFGLKKY GKGDWRNISR NFVITRTPTQ  180
VASHAQKYFI RLNSGGKDKR RSSIHDITTA NLPDNRPPSP SQSSDPATQT SLASTPLPSA  240
PFSSILDSSH PNEATTIATS SVQGSTIRAT KLWSDTLWSA TRRSCTSEWH TRCYRGSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-1736104876RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402284.11e-134PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H73e-89DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM0TLZ00.0M0TLZ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P02380_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-88MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]