PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P02370_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 188aa MW: 21171.6 Da PI: 9.8161 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3.1e-09 | 18 | 66 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46 g+WT+eE +l+ +av++ + +W+++a++++ + +++s++++ GSMUA_Achr8P02370_001 18 GNWTQEENKLFEHAVAKRRFDkdtpdRWEKVAAYIP-VKAVRDVVSHYRD 66 89**********************************.8899*******96 PP | |||||||
2 | Myb_DNA-binding | 44 | 5.2e-14 | 109 | 155 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE+ +++ + k++G+g+W+ I+r + + Rt+ q+ s+ qky GSMUA_Achr8P02370_001 109 RVPWTDEEHWRFLLGLKKYGKGDWRNISRNLVTSRTPTQVASHAQKY 155 789*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.1E-4 | 16 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-8 | 17 | 66 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.377 | 18 | 68 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.16E-8 | 18 | 74 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-4 | 19 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.64E-4 | 19 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-11 | 102 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.311 | 104 | 160 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.08E-17 | 105 | 161 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-17 | 107 | 158 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.4E-11 | 108 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-11 | 109 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.79E-8 | 111 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MASWFLGEKG GAGGIGTGNW TQEENKLFEH AVAKRRFDKD TPDRWEKVAA YIPVKAVRDV 60 VSHYRDSLDY VSEIEAGWVP CPGHDSSLSM QPPCVGGKRA ASDQERKKRV PWTDEEHWRF 120 LLGLKKYGKG DWRNISRNLV TSRTPTQVAS HAQKYFSRLE DKRSSGIHDS STAKLLDNRP 180 PSPSQSSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX613496 | 1e-109 | JX613496.1 Gossypium hirsutum clone NBRI_GE56451 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018685700.1 | 1e-138 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-57 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M0TLY9 | 1e-137 | M0TLY9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P02370_001 | 1e-138 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 4e-57 | MYB family protein |
Publications ? help Back to Top | |||
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