PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P02260_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 27874.9 Da PI: 6.6022 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.6 | 5.9e-08 | 16 | 63 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 g WT eE +l+ a + + +W+++a++++ g+t +++ ++q + GSMUA_Achr8P02260_001 16 GGWTWEENKLFELALIDFEEDtpdRWEKVAACVP-GKTVEEVNIHYQRL 63 56******************9*************.***********986 PP | |||||||
2 | Myb_DNA-binding | 45.5 | 1.8e-14 | 81 | 125 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE++l++ + +G+g+W+ I+r + ++Rt+ q+ s+ qky GSMUA_Achr8P02260_001 81 PWSEEEHKLFLMGLSTHGKGDWRNISRNFVTTRTPTQVASHAQKY 125 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.539 | 10 | 64 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.2E-6 | 14 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.96E-11 | 16 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.5E-6 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.62E-6 | 18 | 64 | No hit | No description |
PROSITE profile | PS51294 | 18.68 | 74 | 130 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-16 | 75 | 130 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-15 | 77 | 129 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.8E-12 | 78 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-11 | 78 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.50E-10 | 81 | 126 | No hit | No description |
Pfam | PF00249 | 3.3E-12 | 81 | 125 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MTESTCSSRV PDRSGGGWTW EENKLFELAL IDFEEDTPDR WEKVAACVPG KTVEEVNIHY 60 QRLIDDLNAI EAGRSSKKGV PWSEEEHKLF LMGLSTHGKG DWRNISRNFV TTRTPTQVAS 120 HAQKYFNRQN SGGKDKRRSS IHDITIASLS HDELLAAARL RTPTPQAQAT STTLPRTFSL 180 QRNDAAGVSN APVRANQFMQ HQFGAAPYGM TMQVQNPQDA GLHGNVVCDD SSLFQMLSDQ 240 QIHGPDFGQY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-14 | 14 | 74 | 7 | 67 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009412979.2 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 4e-62 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M0TLX8 | 0.0 | M0TLX8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P02260_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 2e-56 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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